Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_R0019 and Sama_R0020 are separated by 266 nucleotides Sama_R0020 and Sama_R0021 are separated by 171 nucleotides Sama_R0021 and Sama_0252 are separated by 196 nucleotides
Sama_R0019: Sama_R0019 - 16S ribosomal RNA (RefSeq), at 282,826 to 284,362
_R0019
Sama_R0020: Sama_R0020 - 23S ribosomal RNA (RefSeq), at 284,629 to 287,542
_R0020
Sama_R0021: Sama_R0021 - 5S ribosomal RNA (RefSeq), at 287,714 to 287,829
_R0021
Sama_0252: Sama_0252 - competence/damage-inducible protein CinA (RefSeq), at 288,026 to 289,300
_0252
Position (kb) 284
285
286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 283.691 kb on + strand, within Sama_R0019 at 285.616 kb on + strand, within Sama_R0020 at 287.879 kb on + strand at 287.879 kb on + strand at 287.879 kb on + strand at 287.879 kb on + strand at 287.879 kb on + strand at 287.880 kb on - strand at 287.881 kb on + strand at 287.882 kb on - strand at 287.882 kb on - strand at 287.882 kb on - strand at 287.884 kb on + strand at 287.925 kb on + strand at 287.925 kb on + strand at 287.925 kb on + strand at 287.925 kb on + strand at 287.926 kb on - strand at 287.926 kb on - strand at 287.942 kb on - strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.954 kb on + strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.955 kb on - strand at 287.967 kb on + strand at 287.968 kb on - strand at 287.968 kb on - strand at 287.968 kb on - strand at 287.992 kb on + strand at 287.997 kb on + strand at 287.997 kb on + strand at 287.997 kb on + strand at 287.997 kb on + strand at 287.997 kb on + strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.998 kb on - strand at 287.999 kb on + strand at 287.999 kb on + strand at 287.999 kb on + strand at 287.999 kb on + strand at 288.000 kb on - strand at 288.000 kb on - strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.008 kb on + strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.009 kb on - strand at 288.075 kb on + strand at 288.075 kb on + strand at 288.075 kb on + strand at 288.075 kb on + strand at 288.076 kb on - strand at 288.076 kb on - strand at 288.076 kb on - strand at 288.076 kb on - strand at 288.132 kb on + strand at 288.133 kb on - strand at 288.250 kb on + strand, within Sama_0252 at 288.250 kb on + strand, within Sama_0252 at 288.250 kb on + strand, within Sama_0252 at 288.250 kb on + strand, within Sama_0252 at 288.250 kb on + strand, within Sama_0252 at 288.250 kb on + strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.251 kb on - strand, within Sama_0252 at 288.294 kb on + strand, within Sama_0252 at 288.294 kb on + strand, within Sama_0252 at 288.295 kb on - strand, within Sama_0252 at 288.295 kb on - strand, within Sama_0252 at 288.322 kb on - strand, within Sama_0252 at 288.322 kb on - strand, within Sama_0252 at 288.367 kb on + strand, within Sama_0252 at 288.368 kb on - strand, within Sama_0252 at 288.368 kb on - strand, within Sama_0252 at 288.442 kb on + strand, within Sama_0252 at 288.443 kb on - strand, within Sama_0252 at 288.443 kb on - strand, within Sama_0252
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 283,691 + Sama_R0019 0.56 -0.9 285,616 + Sama_R0020 0.34 -2.3 287,879 + +0.2 287,879 + +1.4 287,879 + +0.3 287,879 + -1.7 287,879 + -0.2 287,880 - +0.3 287,881 + +0.3 287,882 - +0.2 287,882 - -1.2 287,882 - +0.4 287,884 + -0.6 287,925 + +0.9 287,925 + +0.3 287,925 + +0.8 287,925 + +1.0 287,926 - -1.0 287,926 - +1.0 287,942 - +0.6 287,954 + -0.1 287,954 + +0.2 287,954 + +0.1 287,954 + -0.8 287,954 + +1.6 287,954 + +0.2 287,954 + +2.6 287,955 - -0.4 287,955 - +0.5 287,955 - -0.8 287,955 - -0.3 287,955 - -0.1 287,955 - +1.0 287,967 + +1.5 287,968 - -0.0 287,968 - +1.0 287,968 - +1.1 287,992 + -0.0 287,997 + -1.2 287,997 + +1.9 287,997 + +0.4 287,997 + +1.6 287,997 + -1.6 287,998 - -0.4 287,998 - -0.6 287,998 - -0.0 287,998 - -0.7 287,998 - +0.5 287,998 - +0.2 287,998 - -2.3 287,999 + +0.1 287,999 + -2.5 287,999 + +0.2 287,999 + -0.2 288,000 - +0.7 288,000 - -1.2 288,008 + +1.6 288,008 + -0.5 288,008 + +1.4 288,008 + +1.2 288,008 + -1.3 288,008 + +0.3 288,008 + -0.2 288,008 + -0.4 288,009 - -1.5 288,009 - -0.5 288,009 - +1.4 288,009 - +0.1 288,009 - -0.3 288,009 - -1.1 288,009 - +0.4 288,009 - +0.3 288,009 - -0.6 288,009 - +0.9 288,009 - -1.2 288,009 - -0.0 288,075 + +0.9 288,075 + -0.5 288,075 + +3.0 288,075 + -1.3 288,076 - +0.4 288,076 - +0.8 288,076 - +1.4 288,076 - -0.3 288,132 + +0.4 288,133 - -0.4 288,250 + Sama_0252 0.18 -1.1 288,250 + Sama_0252 0.18 +0.3 288,250 + Sama_0252 0.18 -0.3 288,250 + Sama_0252 0.18 -0.0 288,250 + Sama_0252 0.18 -1.8 288,250 + Sama_0252 0.18 +0.7 288,251 - Sama_0252 0.18 -0.3 288,251 - Sama_0252 0.18 -1.8 288,251 - Sama_0252 0.18 +0.3 288,251 - Sama_0252 0.18 -0.9 288,251 - Sama_0252 0.18 +0.2 288,251 - Sama_0252 0.18 +1.0 288,251 - Sama_0252 0.18 -0.1 288,251 - Sama_0252 0.18 +1.8 288,251 - Sama_0252 0.18 +1.7 288,294 + Sama_0252 0.21 -2.3 288,294 + Sama_0252 0.21 +0.3 288,295 - Sama_0252 0.21 -0.6 288,295 - Sama_0252 0.21 +0.6 288,322 - Sama_0252 0.23 +1.8 288,322 - Sama_0252 0.23 +0.4 288,367 + Sama_0252 0.27 +0.7 288,368 - Sama_0252 0.27 +0.5 288,368 - Sama_0252 0.27 +0.7 288,442 + Sama_0252 0.33 +1.3 288,443 - Sama_0252 0.33 +0.6 288,443 - Sama_0252 0.33 -2.3
Or see this region's nucleotide sequence