Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2927

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2925 and Dshi_2926 are separated by 120 nucleotidesDshi_2926 and Dshi_2927 are separated by 49 nucleotidesDshi_2927 and Dshi_2928 overlap by 4 nucleotidesDshi_2928 and Dshi_2929 overlap by 34 nucleotides Dshi_2925: Dshi_2925 - HAD-superfamily subfamily IIA hydrolase like protein (RefSeq), at 3,084,036 to 3,084,908 _2925 Dshi_2926: Dshi_2926 - MaoC domain protein dehydratase (RefSeq), at 3,085,029 to 3,085,472 _2926 Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475 _2927 Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963 _2928 Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763 _2929 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -3 -2 -1 0 1at 3084.567 kb on + strand, within Dshi_2925at 3084.578 kb on + strand, within Dshi_2925at 3084.578 kb on + strand, within Dshi_2925at 3084.599 kb on + strand, within Dshi_2925at 3084.694 kb on - strand, within Dshi_2925at 3084.710 kb on - strand, within Dshi_2925at 3084.765 kb on - strand, within Dshi_2925at 3085.147 kb on - strand, within Dshi_2926at 3085.269 kb on + strand, within Dshi_2926at 3085.440 kb on - strandat 3085.445 kb on - strandat 3085.481 kb on - strandat 3086.634 kb on - strand, within Dshi_2928at 3086.645 kb on - strand, within Dshi_2928at 3086.965 kb on - strandat 3087.011 kb on + strandat 3087.019 kb on - strand, within Dshi_2929at 3087.019 kb on - strand, within Dshi_2929at 3087.057 kb on - strand, within Dshi_2929at 3087.135 kb on - strand, within Dshi_2929at 3087.321 kb on - strand, within Dshi_2929at 3087.432 kb on - strand, within Dshi_2929

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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3,084,567 + Dshi_2925 0.61 +0.7
3,084,578 + Dshi_2925 0.62 -3.2
3,084,578 + Dshi_2925 0.62 -0.1
3,084,599 + Dshi_2925 0.64 +1.0
3,084,694 - Dshi_2925 0.75 +0.0
3,084,710 - Dshi_2925 0.77 +0.1
3,084,765 - Dshi_2925 0.84 -0.8
3,085,147 - Dshi_2926 0.27 -0.2
3,085,269 + Dshi_2926 0.54 +0.2
3,085,440 - +0.4
3,085,445 - +0.5
3,085,481 - -0.0
3,086,634 - Dshi_2928 0.33 -1.2
3,086,645 - Dshi_2928 0.35 -1.5
3,086,965 - +1.3
3,087,011 + -2.3
3,087,019 - Dshi_2929 0.11 -0.2
3,087,019 - Dshi_2929 0.11 -0.6
3,087,057 - Dshi_2929 0.15 +0.2
3,087,135 - Dshi_2929 0.25 -1.1
3,087,321 - Dshi_2929 0.47 -1.9
3,087,432 - Dshi_2929 0.60 -0.0

Or see this region's nucleotide sequence