Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2926

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2925 and Dshi_2926 are separated by 120 nucleotidesDshi_2926 and Dshi_2927 are separated by 49 nucleotides Dshi_2925: Dshi_2925 - HAD-superfamily subfamily IIA hydrolase like protein (RefSeq), at 3,084,036 to 3,084,908 _2925 Dshi_2926: Dshi_2926 - MaoC domain protein dehydratase (RefSeq), at 3,085,029 to 3,085,472 _2926 Dshi_2927: Dshi_2927 - riboflavin biosynthesis protein RibF (RefSeq), at 3,085,522 to 3,086,475 _2927 Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963 _2928 Position (kb) 3085 3086Strain fitness (log2 ratio) -3 -2 -1 0 1at 3084.040 kb on - strandat 3084.106 kb on - strandat 3084.148 kb on - strand, within Dshi_2925at 3084.155 kb on + strand, within Dshi_2925at 3084.202 kb on + strand, within Dshi_2925at 3084.497 kb on + strand, within Dshi_2925at 3084.505 kb on - strand, within Dshi_2925at 3084.517 kb on + strand, within Dshi_2925at 3084.567 kb on + strand, within Dshi_2925at 3084.578 kb on + strand, within Dshi_2925at 3084.578 kb on + strand, within Dshi_2925at 3084.599 kb on + strand, within Dshi_2925at 3084.694 kb on - strand, within Dshi_2925at 3084.710 kb on - strand, within Dshi_2925at 3084.765 kb on - strand, within Dshi_2925at 3085.147 kb on - strand, within Dshi_2926at 3085.269 kb on + strand, within Dshi_2926at 3085.440 kb on - strandat 3085.445 kb on - strandat 3085.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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3,084,040 - -0.2
3,084,106 - -1.3
3,084,148 - Dshi_2925 0.13 -2.5
3,084,155 + Dshi_2925 0.14 -1.0
3,084,202 + Dshi_2925 0.19 -0.0
3,084,497 + Dshi_2925 0.53 +0.0
3,084,505 - Dshi_2925 0.54 +1.2
3,084,517 + Dshi_2925 0.55 -0.0
3,084,567 + Dshi_2925 0.61 +0.7
3,084,578 + Dshi_2925 0.62 -3.2
3,084,578 + Dshi_2925 0.62 -0.1
3,084,599 + Dshi_2925 0.64 +1.0
3,084,694 - Dshi_2925 0.75 +0.0
3,084,710 - Dshi_2925 0.77 +0.1
3,084,765 - Dshi_2925 0.84 -0.8
3,085,147 - Dshi_2926 0.27 -0.2
3,085,269 + Dshi_2926 0.54 +0.2
3,085,440 - +0.4
3,085,445 - +0.5
3,085,481 - -0.0

Or see this region's nucleotide sequence