Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2424

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2423 and Dshi_2424 are separated by 3 nucleotidesDshi_2424 and Dshi_2425 are separated by 414 nucleotides Dshi_2423: Dshi_2423 - Undecaprenyldiphospho-muramoylpentapeptidebeta-N-acetylglucosaminyltransferase (RefSeq), at 2,562,998 to 2,564,107 _2423 Dshi_2424: Dshi_2424 - cell division protein FtsW (RefSeq), at 2,564,111 to 2,565,277 _2424 Dshi_2425: Dshi_2425 - Hemolysin-type calcium-binding region (RefSeq), at 2,565,692 to 2,567,371 _2425 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -2 -1 0 1at 2564.116 kb on - strandat 2565.367 kb on + strandat 2565.511 kb on - strandat 2565.555 kb on - strandat 2565.597 kb on + strandat 2565.616 kb on + strandat 2565.616 kb on + strandat 2565.616 kb on + strandat 2565.616 kb on + strandat 2565.623 kb on - strandat 2565.641 kb on + strandat 2565.680 kb on - strandat 2565.730 kb on + strandat 2565.829 kb on + strandat 2565.829 kb on + strandat 2565.829 kb on + strandat 2565.829 kb on + strandat 2565.837 kb on - strandat 2565.837 kb on - strandat 2566.051 kb on + strand, within Dshi_2425at 2566.082 kb on - strand, within Dshi_2425at 2566.123 kb on + strand, within Dshi_2425at 2566.128 kb on + strand, within Dshi_2425at 2566.229 kb on - strand, within Dshi_2425

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,564,116 - -0.5
2,565,367 + +1.4
2,565,511 - +0.9
2,565,555 - -1.1
2,565,597 + +0.6
2,565,616 + +0.6
2,565,616 + -0.4
2,565,616 + -0.0
2,565,616 + -2.1
2,565,623 - -0.7
2,565,641 + -0.2
2,565,680 - +0.9
2,565,730 + -0.3
2,565,829 + -0.0
2,565,829 + -0.3
2,565,829 + +0.4
2,565,829 + -0.2
2,565,837 - +0.3
2,565,837 - +0.1
2,566,051 + Dshi_2425 0.21 -0.1
2,566,082 - Dshi_2425 0.23 +0.2
2,566,123 + Dshi_2425 0.26 -1.4
2,566,128 + Dshi_2425 0.26 -0.5
2,566,229 - Dshi_2425 0.32 -0.1

Or see this region's nucleotide sequence