Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2421

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2419 and Dshi_2420 are separated by 64 nucleotidesDshi_2420 and Dshi_2421 overlap by 4 nucleotidesDshi_2421 and Dshi_2422 are separated by 52 nucleotides Dshi_2419: Dshi_2419 - D-alanine--D-alanine ligase (RefSeq), at 2,559,329 to 2,560,255 _2419 Dshi_2420: Dshi_2420 - UDP-N-acetylenolpyruvoylglucosamine reductase (RefSeq), at 2,560,320 to 2,561,243 _2420 Dshi_2421: Dshi_2421 - hypothetical protein (RefSeq), at 2,561,240 to 2,561,506 _2421 Dshi_2422: Dshi_2422 - UDP-N-acetylmuramate--alanine ligase (RefSeq), at 2,561,559 to 2,562,971 _2422 Position (kb) 2561 2562Strain fitness (log2 ratio) -1 0 1at 2561.556 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,561,556 + -1.7

Or see this region's nucleotide sequence