Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_5002

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1927 and Dshi_1928 are separated by 57 nucleotidesDshi_1928 and xerC are separated by 3 nucleotidesxerC and Dshi_1930 are separated by 19 nucleotidesDshi_1930 and Dshi_1931 are separated by 62 nucleotides Dshi_1927: Dshi_1927 - putative transaldolase (RefSeq), at 2,014,831 to 2,015,484 _1927 Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249 _1928 Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179 xerC Dshi_1930: Dshi_1930 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,017,199 to 2,018,038 _1930 Dshi_1931: Dshi_1931 - hypothetical protein (RefSeq), at 2,018,101 to 2,018,352 _1931 Position (kb) 2016 2017 2018Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2015.257 kb on - strand, within Dshi_1927at 2015.308 kb on - strand, within Dshi_1927at 2015.538 kb on + strandat 2015.546 kb on - strandat 2015.599 kb on + strandat 2015.695 kb on - strand, within Dshi_1928at 2016.345 kb on + strandat 2017.121 kb on - strandat 2017.121 kb on - strandat 2017.160 kb on - strandat 2017.173 kb on + strandat 2017.181 kb on - strandat 2017.221 kb on - strandat 2017.573 kb on - strand, within Dshi_1930at 2017.619 kb on + strand, within Dshi_1930at 2017.838 kb on - strand, within Dshi_1930at 2018.082 kb on - strandat 2018.105 kb on - strandat 2018.130 kb on + strand, within Dshi_1931

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,015,257 - Dshi_1927 0.65 -5.2
2,015,308 - Dshi_1927 0.73 -1.9
2,015,538 + +0.1
2,015,546 - +0.1
2,015,599 + -0.3
2,015,695 - Dshi_1928 0.22 -0.3
2,016,345 + -1.3
2,017,121 - +0.3
2,017,121 - -0.5
2,017,160 - +1.7
2,017,173 + -1.6
2,017,181 - -0.1
2,017,221 - +1.7
2,017,573 - Dshi_1930 0.45 -1.4
2,017,619 + Dshi_1930 0.50 -0.5
2,017,838 - Dshi_1930 0.76 +0.1
2,018,082 - -2.3
2,018,105 - -1.0
2,018,130 + Dshi_1931 0.12 -0.3

Or see this region's nucleotide sequence