Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1927

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1926 and Dshi_1927 are separated by 77 nucleotidesDshi_1927 and Dshi_1928 are separated by 57 nucleotidesDshi_1928 and xerC are separated by 3 nucleotides Dshi_1926: Dshi_1926 - primosomal protein N' (RefSeq), at 2,012,570 to 2,014,753 _1926 Dshi_1927: Dshi_1927 - putative transaldolase (RefSeq), at 2,014,831 to 2,015,484 _1927 Dshi_1928: Dshi_1928 - protein of unknown function DUF484 (RefSeq), at 2,015,542 to 2,016,249 _1928 Dshi_5002: xerC - hypothetical protein (NCBI), at 2,016,253 to 2,017,179 xerC Position (kb) 2014 2015 2016Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2014.740 kb on + strandat 2014.773 kb on + strandat 2014.773 kb on + strandat 2014.850 kb on + strandat 2014.985 kb on - strand, within Dshi_1927at 2015.080 kb on - strand, within Dshi_1927at 2015.088 kb on + strand, within Dshi_1927at 2015.257 kb on - strand, within Dshi_1927at 2015.308 kb on - strand, within Dshi_1927at 2015.538 kb on + strandat 2015.546 kb on - strandat 2015.599 kb on + strandat 2015.695 kb on - strand, within Dshi_1928at 2016.345 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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2,014,740 + -0.1
2,014,773 + -2.5
2,014,773 + -3.2
2,014,850 + -3.8
2,014,985 - Dshi_1927 0.24 -2.8
2,015,080 - Dshi_1927 0.38 -1.9
2,015,088 + Dshi_1927 0.39 -2.5
2,015,257 - Dshi_1927 0.65 -5.2
2,015,308 - Dshi_1927 0.73 -1.9
2,015,538 + +0.1
2,015,546 - +0.1
2,015,599 + -0.3
2,015,695 - Dshi_1928 0.22 -0.3
2,016,345 + -1.3

Or see this region's nucleotide sequence