Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1727

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1726 and Dshi_1727 are separated by 9 nucleotidesDshi_1727 and Dshi_1728 are separated by 88 nucleotides Dshi_1726: Dshi_1726 - Beta-N-acetylhexosaminidase (RefSeq), at 1,792,572 to 1,793,558 _1726 Dshi_1727: Dshi_1727 - Sporulation domain protein (RefSeq), at 1,793,568 to 1,794,512 _1727 Dshi_1728: Dshi_1728 - arginyl-tRNA synthetase (RefSeq), at 1,794,601 to 1,796,346 _1728 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -3 -2 -1 0 1at 1792.647 kb on - strandat 1792.805 kb on + strand, within Dshi_1726at 1792.933 kb on + strand, within Dshi_1726at 1793.122 kb on - strand, within Dshi_1726at 1793.505 kb on + strandat 1793.587 kb on - strandat 1793.931 kb on - strand, within Dshi_1727at 1793.966 kb on + strand, within Dshi_1727at 1794.063 kb on + strand, within Dshi_1727

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,792,647 - -0.7
1,792,805 + Dshi_1726 0.24 +1.2
1,792,933 + Dshi_1726 0.37 -0.1
1,793,122 - Dshi_1726 0.56 +0.0
1,793,505 + +0.2
1,793,587 - -1.3
1,793,931 - Dshi_1727 0.38 -1.2
1,793,966 + Dshi_1727 0.42 -3.3
1,794,063 + Dshi_1727 0.52 -2.4

Or see this region's nucleotide sequence