Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0767

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0765 and Dshi_0766 are separated by 77 nucleotidesDshi_0766 and Dshi_0767 are separated by 1 nucleotidesDshi_0767 and Dshi_0768 are separated by 176 nucleotides Dshi_0765: Dshi_0765 - transcriptional regulator, MarR family (RefSeq), at 773,281 to 773,778 _0765 Dshi_0766: Dshi_0766 - protein of unknown function DUF1194 (RefSeq), at 773,856 to 774,593 _0766 Dshi_0767: Dshi_0767 - Glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 774,595 to 775,023 _0767 Dshi_0768: Dshi_0768 - thymidylate synthase, flavin-dependent (RefSeq), at 775,200 to 776,117 _0768 Position (kb) 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1at 773.621 kb on + strand, within Dshi_0765at 773.745 kb on + strandat 773.745 kb on + strandat 773.745 kb on + strandat 773.753 kb on - strandat 773.795 kb on - strandat 773.805 kb on - strandat 773.836 kb on + strandat 773.836 kb on + strandat 773.844 kb on - strandat 773.844 kb on - strandat 773.872 kb on - strandat 773.876 kb on + strandat 773.904 kb on + strandat 773.954 kb on - strand, within Dshi_0766at 773.954 kb on - strand, within Dshi_0766at 773.954 kb on - strand, within Dshi_0766at 773.960 kb on + strand, within Dshi_0766at 773.968 kb on - strand, within Dshi_0766at 774.004 kb on + strand, within Dshi_0766at 774.075 kb on - strand, within Dshi_0766at 774.080 kb on + strand, within Dshi_0766at 774.199 kb on - strand, within Dshi_0766at 774.254 kb on + strand, within Dshi_0766at 774.303 kb on + strand, within Dshi_0766at 774.531 kb on - strandat 774.537 kb on - strandat 774.539 kb on + strandat 774.539 kb on + strandat 774.542 kb on - strandat 774.542 kb on - strandat 774.542 kb on - strandat 774.575 kb on + strandat 774.646 kb on + strand, within Dshi_0767at 774.679 kb on + strand, within Dshi_0767at 774.882 kb on - strand, within Dshi_0767at 774.911 kb on - strand, within Dshi_0767at 774.950 kb on - strand, within Dshi_0767at 774.979 kb on + strand, within Dshi_0767at 775.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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773,621 + Dshi_0765 0.68 -1.9
773,745 + -3.1
773,745 + -3.0
773,745 + -2.4
773,753 - -3.3
773,795 - -0.4
773,805 - -0.1
773,836 + -2.0
773,836 + -0.2
773,844 - -0.8
773,844 - +0.7
773,872 - +0.1
773,876 + -0.1
773,904 + -0.8
773,954 - Dshi_0766 0.13 -0.3
773,954 - Dshi_0766 0.13 -0.0
773,954 - Dshi_0766 0.13 +0.0
773,960 + Dshi_0766 0.14 -0.7
773,968 - Dshi_0766 0.15 -0.1
774,004 + Dshi_0766 0.20 -0.6
774,075 - Dshi_0766 0.30 +0.7
774,080 + Dshi_0766 0.30 +0.1
774,199 - Dshi_0766 0.46 -1.2
774,254 + Dshi_0766 0.54 -0.9
774,303 + Dshi_0766 0.61 +0.8
774,531 - +0.5
774,537 - -0.7
774,539 + -0.0
774,539 + +0.1
774,542 - -1.0
774,542 - -1.1
774,542 - -0.7
774,575 + -0.6
774,646 + Dshi_0767 0.12 -0.3
774,679 + Dshi_0767 0.20 +0.3
774,882 - Dshi_0767 0.67 +0.0
774,911 - Dshi_0767 0.74 -0.3
774,950 - Dshi_0767 0.83 -0.1
774,979 + Dshi_0767 0.90 -0.7
775,065 + +0.2

Or see this region's nucleotide sequence