Strain Fitness in Shewanella oneidensis MR-1 around SO4681

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
4,879,019	-		SO4680	0.25	-1.0
4,879,029	+		SO4680	0.26	-1.2
4,879,097	-		SO4680	0.32	-3.6
4,879,107	-		SO4680	0.33	-1.7
4,879,129	+		SO4680	0.35	-1.0
4,879,262	-		SO4680	0.48	-1.9
4,879,286	+		SO4680	0.50	-0.3
4,879,286	+		SO4680	0.50	-0.8
4,879,294	-		SO4680	0.51	-1.5
4,879,294	-		SO4680	0.51	-0.9
4,879,294	-		SO4680	0.51	-0.7
4,879,294	-		SO4680	0.51	-1.5
4,879,294	-		SO4680	0.51	-2.6
4,879,318	+		SO4680	0.53	-1.8
4,879,326	-		SO4680	0.54	-2.2
4,879,353	+		SO4680	0.56	+0.4
4,879,353	+		SO4680	0.56	-2.2
4,879,361	-		SO4680	0.57	-1.0
4,879,361	-		SO4680	0.57	+0.1
4,879,399	+		SO4680	0.60	-0.9
4,879,407	-		SO4680	0.61	-0.3
4,879,431	-		SO4680	0.63	-1.6
4,879,473	+		SO4680	0.67	-0.3
4,879,488	-		SO4680	0.69	-0.8
4,879,491	-		SO4680	0.69	-1.0
4,879,522	+		SO4680	0.72	+0.2
4,879,522	+		SO4680	0.72	-0.2
4,879,522	+		SO4680	0.72	-1.2
4,879,522	+		SO4680	0.72	-1.0
4,879,522	+		SO4680	0.72	-0.3
4,879,530	-		SO4680	0.73	-1.4
4,879,575	+		SO4680	0.77	-0.8
4,879,619	-		SO4680	0.81	-0.2
4,879,750	+				-1.3
4,879,750	+				-1.7
4,879,750	+				-1.8
4,879,758	-				-0.9
4,879,758	-				-2.1
4,879,758	-				-1.5
4,879,758	-				+0.4
4,879,758	-				-1.2
4,879,846	+				-0.9
4,879,879	-				-0.5
4,879,898	-				-2.8
4,879,931	+				-2.3
4,880,026	+		SO4681	0.14	-1.7
4,880,026	+		SO4681	0.14	-1.4
4,880,046	-		SO4681	0.16	-0.9
4,880,050	+		SO4681	0.16	+0.1
4,880,050	+		SO4681	0.16	-1.1
4,880,050	+		SO4681	0.16	-1.9
4,880,058	-		SO4681	0.17	-0.6
4,880,058	-		SO4681	0.17	-1.5
4,880,065	+		SO4681	0.17	-2.4
4,880,108	-		SO4681	0.21	-1.1
4,880,111	+		SO4681	0.21	-1.3
4,880,111	+		SO4681	0.21	-1.6
4,880,118	-		SO4681	0.22	-1.2
4,880,131	+		SO4681	0.23	+0.4
4,880,139	-		SO4681	0.24	-1.0
4,880,139	-		SO4681	0.24	-1.0
4,880,139	-		SO4681	0.24	-1.5
4,880,139	-		SO4681	0.24	-0.9
4,880,139	-		SO4681	0.24	-0.1
4,880,139	-		SO4681	0.24	-1.3
4,880,169	+		SO4681	0.26	-1.1
4,880,233	-		SO4681	0.32	+0.0
4,880,253	-		SO4681	0.33	-1.3
4,880,253	-		SO4681	0.33	-0.4
4,880,301	+		SO4681	0.37	-1.6
4,880,301	+		SO4681	0.37	-2.3
4,880,309	-		SO4681	0.38	-0.8
4,880,309	-		SO4681	0.38	-1.1
4,880,375	+		SO4681	0.44	-1.6
4,880,388	+		SO4681	0.45	-1.5
4,880,396	-		SO4681	0.45	-2.8
4,880,508	-		SO4681	0.55	-1.4
4,880,567	+		SO4681	0.60	-0.3
4,880,567	+		SO4681	0.60	-1.3
4,880,567	+		SO4681	0.60	-2.3
4,880,567	+		SO4681	0.60	-2.8
4,880,574	+		SO4681	0.60	-1.1
4,880,575	+		SO4681	0.61	-0.8
4,880,575	+		SO4681	0.61	-1.7
4,880,575	+		SO4681	0.61	-2.1
4,880,575	+		SO4681	0.61	-0.9
4,880,575	-		SO4681	0.61	-1.0
4,880,575	-		SO4681	0.61	-1.9
4,880,575	-		SO4681	0.61	-1.5
4,880,583	-		SO4681	0.61	-2.9
4,880,583	-		SO4681	0.61	-0.6
4,880,583	-		SO4681	0.61	-1.3
4,880,583	-		SO4681	0.61	-1.6
4,880,597	+		SO4681	0.62	+0.8
4,880,636	+		SO4681	0.66	-1.6
4,880,644	-		SO4681	0.66	-2.9
4,880,644	-		SO4681	0.66	-1.7
4,880,644	-		SO4681	0.66	+0.9
4,880,653	+		SO4681	0.67	-2.5
4,880,661	-		SO4681	0.68	-1.6
4,880,661	-		SO4681	0.68	-2.2
4,880,824	+		SO4681	0.82	-2.0
4,880,824	+		SO4681	0.82	-0.4
4,880,832	+		SO4681	0.82	-1.3
4,880,832	-		SO4681	0.82	-1.8
4,880,832	-		SO4681	0.82	-2.0
4,880,839	+		SO4681	0.83	-2.0
4,880,840	-		SO4681	0.83	+0.6
4,880,862	+		SO4681	0.85	-2.1
4,880,874	+		SO4681	0.86	-1.8
4,880,882	-		SO4681	0.87	-1.4
4,880,923	+				-0.4
4,880,929	+				-0.9
4,880,931	-				-0.3
4,880,931	-				-0.4
4,880,931	-				-1.3
4,880,931	-				-1.3
4,880,937	-				-1.4
4,880,943	+				-1.7
4,880,943	+				-1.1
4,880,968	+				-0.6
4,880,968	+				-1.4
4,880,968	+				-3.2
4,880,968	+				-1.7
4,880,974	+				-1.8
4,880,976	+				-1.3
4,880,976	+				-0.6
4,880,976	+				-2.8
4,880,976	+				-1.4
4,880,976	-				-2.4
4,880,976	-				-0.9
4,880,976	-				-1.3
4,880,980	+				-1.8
4,880,980	+				-0.5
4,880,984	-				-0.9
4,880,984	-				-1.2
4,880,984	-				-2.2
4,880,988	-				-0.4
4,880,988	-				-2.8
4,880,988	-				-0.2
4,881,024	+				-0.9
4,881,031	-				-1.3
4,881,042	-				-0.5
4,881,043	-				-0.5
4,881,043	-				-1.1
4,881,072	-				+0.4
4,881,072	-				+0.2
4,881,213	+				+0.2
4,881,213	+				+2.4
4,881,213	+				+1.2
4,881,213	+				+0.7
4,881,221	-				+0.1
4,881,221	-				-0.5
4,881,286	-				+0.0
4,881,292	-				+0.2
4,881,357	+				-1.7
4,881,394	+				-0.8
4,881,394	+				-2.0
4,881,394	+				-1.2
4,881,394	+				-0.0
4,881,394	+				+0.5
4,881,394	+				-0.0
4,881,394	+				-0.5
4,881,394	+				-1.5
4,881,394	+				-1.2
4,881,394	+				-0.5
4,881,394	+				-0.8
4,881,402	-				-1.5
4,881,402	-				-1.0
4,881,402	-				-0.6
4,881,402	-				-0.9
4,881,402	-				-1.5
4,881,402	-				-1.4
4,881,402	-				-1.4
4,881,402	-				-0.8
4,881,402	-				-1.4
4,881,402	-				-0.8
4,881,402	-				-1.2
4,881,421	+				-0.8
4,881,421	+				-1.8
4,881,421	-				-0.5
4,881,424	-				-0.6
4,881,429	-				-1.0
4,881,429	-				+0.1
4,881,429	-				-1.3
4,881,534	+		SO4682	0.20	-1.4
4,881,534	+		SO4682	0.20	+0.9
4,881,568	+		SO4682	0.23	-0.5
4,881,644	-		SO4682	0.30	-1.7
4,881,655	+		SO4682	0.31	-1.0
4,881,661	+		SO4682	0.31	-1.3
4,881,661	+		SO4682	0.31	-0.9
4,881,661	+		SO4682	0.31	+0.2
4,881,663	+		SO4682	0.32	-1.2
4,881,669	-		SO4682	0.32	-0.8
4,881,679	-		SO4682	0.33	-0.3
4,881,720	+		SO4682	0.37	-0.4
4,881,726	+		SO4682	0.37	-0.9
4,881,734	-		SO4682	0.38	-2.0
4,881,786	-		SO4682	0.43	-0.3
4,881,842	+		SO4682	0.48	-0.8
4,881,886	-		SO4682	0.52	-0.8
4,881,920	-		SO4682	0.56	-1.0