Strain Fitness in Shewanella oneidensis MR-1 around SO3226

Experiment: Gelatin (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin (C)
3,363,608	+	fliI	SO3225	0.24	+4.6
3,363,613	-	fliI	SO3225	0.24	+4.5
3,363,690	-	fliI	SO3225	0.30	+4.0
3,363,707	+	fliI	SO3225	0.31	+4.3
3,363,707	+	fliI	SO3225	0.31	+4.1
3,363,935	-	fliI	SO3225	0.48	+3.6
3,363,935	-	fliI	SO3225	0.48	+4.8
3,364,071	-	fliI	SO3225	0.59	+3.3
3,364,096	+	fliI	SO3225	0.60	+4.4
3,364,235	+	fliI	SO3225	0.71	+4.5
3,364,314	-	fliI	SO3225	0.77	+4.2
3,364,553	-				+3.9
3,364,553	-				+4.3
3,365,035	-	fliH	SO3226	0.46	+3.7
3,365,071	-	fliH	SO3226	0.50	+3.5
3,365,076	+	fliH	SO3226	0.51	+4.8
3,365,084	-	fliH	SO3226	0.52	+4.1
3,365,084	-	fliH	SO3226	0.52	+4.2
3,365,113	-	fliH	SO3226	0.55	+4.1
3,365,204	-	fliH	SO3226	0.64	+3.8
3,365,239	+	fliH	SO3226	0.68	+3.4
3,365,246	+	fliH	SO3226	0.69	+4.3
3,365,249	-	fliH	SO3226	0.69	+4.1
3,365,264	-	fliH	SO3226	0.70	+4.4
3,365,292	+	fliH	SO3226	0.73	+4.6
3,365,299	-	fliH	SO3226	0.74	+4.9
3,365,300	-	fliH	SO3226	0.74	+4.0
3,365,417	-	fliH	SO3226	0.87	+7.1
3,365,417	-	fliH	SO3226	0.87	+3.4
3,365,583	+				+3.9
3,365,644	-	fliG	SO3227	0.11	+2.5
3,365,744	-	fliG	SO3227	0.20	+3.4
3,365,777	-	fliG	SO3227	0.23	+2.7
3,365,783	+	fliG	SO3227	0.24	+3.3
3,365,791	-	fliG	SO3227	0.25	+2.3
3,365,926	-	fliG	SO3227	0.38	+2.3
3,365,972	+	fliG	SO3227	0.42	+2.9
3,365,980	-	fliG	SO3227	0.43	+3.1
3,366,027	+	fliG	SO3227	0.47	+2.7
3,366,035	-	fliG	SO3227	0.48	+2.4
3,366,266	+	fliG	SO3227	0.70	+3.4
3,366,274	-	fliG	SO3227	0.71	+3.9
3,366,292	-	fliG	SO3227	0.73	+3.1
3,366,393	-	fliG	SO3227	0.82	+2.3
3,366,430	-	fliG	SO3227	0.86	+1.7
3,366,432	+	fliG	SO3227	0.86	+2.4
3,366,439	+	fliG	SO3227	0.87	+2.4
3,366,475	+				+2.6