Strain Fitness in Shewanella oneidensis MR-1 around SO2253

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2251 and SO2253 are separated by 572 nucleotidesSO2253 and SO2254 are separated by 120 nucleotides SO2251: SO2251 - conserved hypothetical protein (NCBI ptt file), at 2,365,344 to 2,365,883 SO2251 SO2253: SO2253 - acylphosphatase (NCBI ptt file), at 2,366,456 to 2,366,728 SO2253 SO2254: SO2254 - conserved hypothetical protein (NCBI ptt file), at 2,366,849 to 2,367,847 SO2254 Position (kb) 2366 2367Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2365.527 kb on + strand, within SO2251at 2365.744 kb on + strand, within SO2251at 2365.754 kb on + strand, within SO2251at 2365.875 kb on - strandat 2365.875 kb on - strandat 2365.885 kb on - strandat 2365.909 kb on - strandat 2366.024 kb on + strandat 2366.303 kb on - strandat 2366.407 kb on + strandat 2366.422 kb on + strandat 2366.489 kb on + strand, within SO2253at 2366.494 kb on + strand, within SO2253at 2366.661 kb on + strand, within SO2253at 2366.762 kb on + strandat 2367.220 kb on - strand, within SO2254at 2367.303 kb on + strand, within SO2254at 2367.311 kb on - strand, within SO2254at 2367.311 kb on - strand, within SO2254at 2367.330 kb on + strand, within SO2254at 2367.496 kb on + strand, within SO2254

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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2,365,527 + SO2251 0.34 +0.1
2,365,744 + SO2251 0.74 -0.6
2,365,754 + SO2251 0.76 -1.8
2,365,875 - +0.6
2,365,875 - -0.7
2,365,885 - -1.3
2,365,909 - +0.7
2,366,024 + -0.4
2,366,303 - +3.0
2,366,407 + -0.1
2,366,422 + +2.3
2,366,489 + SO2253 0.12 +0.3
2,366,494 + SO2253 0.14 -0.0
2,366,661 + SO2253 0.75 +0.6
2,366,762 + -0.9
2,367,220 - SO2254 0.37 +2.3
2,367,303 + SO2254 0.45 +3.1
2,367,311 - SO2254 0.46 +2.5
2,367,311 - SO2254 0.46 +2.6
2,367,330 + SO2254 0.48 +2.0
2,367,496 + SO2254 0.65 -0.2

Or see this region's nucleotide sequence