Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0942 and SO0943 overlap by 20 nucleotides SO0943 and SO0944 are separated by 164 nucleotides
SO0942: SO0942 - conserved hypothetical protein (NCBI ptt file), at 972,576 to 973,976
SO0942
SO0943: SO0943 - sensory box protein, putative (NCBI ptt file), at 973,957 to 976,194
SO0943
SO0944: SO0944 - conserved hypothetical protein (NCBI ptt file), at 976,359 to 977,147
SO0944
Position (kb) 973
974
975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 973.067 kb on + strand, within SO0942 at 973.074 kb on + strand, within SO0942 at 973.074 kb on + strand, within SO0942 at 973.074 kb on + strand, within SO0942 at 973.147 kb on + strand, within SO0942 at 973.398 kb on + strand, within SO0942 at 973.398 kb on + strand, within SO0942 at 973.398 kb on + strand, within SO0942 at 973.406 kb on - strand, within SO0942 at 973.542 kb on + strand, within SO0942 at 973.672 kb on + strand, within SO0942 at 973.747 kb on + strand, within SO0942 at 973.747 kb on + strand, within SO0942 at 973.747 kb on + strand, within SO0942 at 973.747 kb on + strand, within SO0942 at 973.755 kb on - strand, within SO0942 at 973.863 kb on + strand at 973.964 kb on - strand at 973.969 kb on - strand at 974.033 kb on + strand at 974.049 kb on + strand at 974.057 kb on - strand at 974.057 kb on - strand at 974.057 kb on - strand at 974.057 kb on - strand at 974.057 kb on - strand at 974.057 kb on - strand at 974.095 kb on + strand at 974.103 kb on - strand at 974.142 kb on - strand at 974.223 kb on + strand, within SO0943 at 974.231 kb on - strand, within SO0943 at 974.480 kb on + strand, within SO0943 at 974.577 kb on + strand, within SO0943 at 974.678 kb on + strand, within SO0943 at 974.686 kb on - strand, within SO0943 at 974.894 kb on + strand, within SO0943 at 974.902 kb on - strand, within SO0943 at 974.992 kb on - strand, within SO0943 at 975.053 kb on + strand, within SO0943 at 975.061 kb on - strand, within SO0943 at 975.113 kb on + strand, within SO0943 at 975.113 kb on + strand, within SO0943 at 975.123 kb on - strand, within SO0943 at 975.145 kb on + strand, within SO0943 at 975.201 kb on - strand, within SO0943 at 975.216 kb on + strand, within SO0943 at 975.216 kb on + strand, within SO0943 at 975.216 kb on + strand, within SO0943 at 975.216 kb on + strand, within SO0943 at 975.310 kb on + strand, within SO0943 at 975.346 kb on - strand, within SO0943 at 975.483 kb on + strand, within SO0943 at 975.491 kb on - strand, within SO0943 at 975.491 kb on - strand, within SO0943 at 975.568 kb on - strand, within SO0943 at 975.643 kb on + strand, within SO0943 at 975.743 kb on - strand, within SO0943 at 975.745 kb on - strand, within SO0943 at 975.764 kb on - strand, within SO0943 at 975.931 kb on - strand, within SO0943 at 975.997 kb on + strand at 976.127 kb on - strand at 976.132 kb on - strand at 976.134 kb on + strand at 976.167 kb on + strand at 976.167 kb on + strand at 976.181 kb on - strand at 976.200 kb on + strand at 976.208 kb on - strand at 976.235 kb on - strand at 976.242 kb on + strand at 976.308 kb on - strand at 976.378 kb on + strand at 976.464 kb on + strand, within SO0944 at 976.464 kb on + strand, within SO0944 at 976.472 kb on - strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.519 kb on + strand, within SO0944 at 976.527 kb on - strand, within SO0944 at 976.554 kb on + strand, within SO0944 at 976.610 kb on + strand, within SO0944 at 976.618 kb on - strand, within SO0944 at 976.736 kb on - strand, within SO0944 at 976.750 kb on + strand, within SO0944 at 976.773 kb on + strand, within SO0944 at 976.793 kb on - strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.810 kb on + strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.818 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.832 kb on - strand, within SO0944 at 976.957 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.962 kb on + strand, within SO0944 at 976.972 kb on + strand, within SO0944 at 976.980 kb on - strand, within SO0944 at 976.989 kb on + strand, within SO0944 at 977.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 973,067 + SO0942 0.35 -0.9 973,074 + SO0942 0.36 -0.3 973,074 + SO0942 0.36 -1.6 973,074 + SO0942 0.36 -0.4 973,147 + SO0942 0.41 +0.0 973,398 + SO0942 0.59 -0.6 973,398 + SO0942 0.59 +0.2 973,398 + SO0942 0.59 -0.5 973,406 - SO0942 0.59 -0.5 973,542 + SO0942 0.69 -1.1 973,672 + SO0942 0.78 -0.2 973,747 + SO0942 0.84 -0.3 973,747 + SO0942 0.84 -0.9 973,747 + SO0942 0.84 -0.5 973,747 + SO0942 0.84 -0.4 973,755 - SO0942 0.84 -2.2 973,863 + -1.1 973,964 - +1.0 973,969 - -0.2 974,033 + +2.7 974,049 + +2.2 974,057 - +2.0 974,057 - +2.2 974,057 - +2.2 974,057 - +2.4 974,057 - +2.2 974,057 - +2.6 974,095 + +2.3 974,103 - +2.9 974,142 - +3.3 974,223 + SO0943 0.12 +2.6 974,231 - SO0943 0.12 +3.2 974,480 + SO0943 0.23 +3.4 974,577 + SO0943 0.28 +3.6 974,678 + SO0943 0.32 +4.1 974,686 - SO0943 0.33 +2.7 974,894 + SO0943 0.42 +2.7 974,902 - SO0943 0.42 +2.7 974,992 - SO0943 0.46 +3.8 975,053 + SO0943 0.49 +3.0 975,061 - SO0943 0.49 +4.2 975,113 + SO0943 0.52 +3.9 975,113 + SO0943 0.52 +3.4 975,123 - SO0943 0.52 +3.0 975,145 + SO0943 0.53 +2.8 975,201 - SO0943 0.56 +3.1 975,216 + SO0943 0.56 +3.3 975,216 + SO0943 0.56 +3.9 975,216 + SO0943 0.56 +2.7 975,216 + SO0943 0.56 +3.4 975,310 + SO0943 0.60 +3.4 975,346 - SO0943 0.62 +2.9 975,483 + SO0943 0.68 +4.1 975,491 - SO0943 0.69 +2.8 975,491 - SO0943 0.69 +3.7 975,568 - SO0943 0.72 +2.9 975,643 + SO0943 0.75 +3.5 975,743 - SO0943 0.80 +3.1 975,745 - SO0943 0.80 +3.3 975,764 - SO0943 0.81 +3.5 975,931 - SO0943 0.88 +2.9 975,997 + +3.1 976,127 - +2.0 976,132 - +3.0 976,134 + +2.5 976,167 + +2.9 976,167 + +3.8 976,181 - +3.1 976,200 + +3.5 976,208 - -1.4 976,235 - +1.8 976,242 + +0.6 976,308 - +0.8 976,378 + +0.4 976,464 + SO0944 0.13 +0.1 976,464 + SO0944 0.13 +1.8 976,472 - SO0944 0.14 +0.8 976,519 + SO0944 0.20 +0.4 976,519 + SO0944 0.20 -0.3 976,519 + SO0944 0.20 -1.0 976,519 + SO0944 0.20 +0.1 976,527 - SO0944 0.21 +0.5 976,554 + SO0944 0.25 -0.6 976,610 + SO0944 0.32 +2.0 976,618 - SO0944 0.33 -0.1 976,736 - SO0944 0.48 -0.3 976,750 + SO0944 0.50 +0.2 976,773 + SO0944 0.52 +0.4 976,793 - SO0944 0.55 -0.1 976,810 + SO0944 0.57 +1.2 976,810 + SO0944 0.57 +0.5 976,818 - SO0944 0.58 +0.8 976,818 - SO0944 0.58 -1.0 976,818 - SO0944 0.58 +0.1 976,832 - SO0944 0.60 +0.0 976,832 - SO0944 0.60 -0.3 976,957 + SO0944 0.76 +1.7 976,962 + SO0944 0.76 -2.0 976,962 + SO0944 0.76 +0.1 976,972 + SO0944 0.78 +1.0 976,980 - SO0944 0.79 -0.3 976,989 + SO0944 0.80 +0.7 977,103 - +0.0
Or see this region's nucleotide sequence