Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sfsA and pepB are separated by 168 nucleotides pepB and SO0877 are separated by 188 nucleotides
SO0875: sfsA - sugar fermentation stimulation protein (NCBI ptt file), at 904,739 to 905,443
sfsA
SO0876: pepB - peptidase B (NCBI ptt file), at 905,612 to 906,904
pepB
SO0877: SO0877 - acetyltransferase, GNAT family (NCBI ptt file), at 907,093 to 907,602
SO0877
Position (kb) 905
906
907 Strain fitness (log2 ratio) -1
0
1
2 at 904.702 kb on - strand at 904.756 kb on - strand at 904.763 kb on + strand at 904.763 kb on + strand at 904.771 kb on - strand at 904.771 kb on - strand at 904.930 kb on + strand, within sfsA at 904.938 kb on - strand, within sfsA at 904.997 kb on + strand, within sfsA at 905.137 kb on - strand, within sfsA at 905.172 kb on + strand, within sfsA at 905.172 kb on + strand, within sfsA at 905.254 kb on - strand, within sfsA at 905.268 kb on + strand, within sfsA at 905.302 kb on - strand, within sfsA at 905.433 kb on - strand at 905.438 kb on + strand at 905.497 kb on + strand at 905.619 kb on + strand at 905.688 kb on - strand at 905.723 kb on + strand at 905.731 kb on - strand at 905.738 kb on + strand at 905.791 kb on + strand, within pepB at 905.846 kb on + strand, within pepB at 905.882 kb on + strand, within pepB at 905.972 kb on + strand, within pepB at 905.988 kb on - strand, within pepB at 906.044 kb on - strand, within pepB at 906.202 kb on + strand, within pepB at 906.203 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.299 kb on + strand, within pepB at 906.307 kb on - strand, within pepB at 906.307 kb on - strand, within pepB at 906.307 kb on - strand, within pepB at 906.368 kb on - strand, within pepB at 906.396 kb on + strand, within pepB at 906.444 kb on - strand, within pepB at 906.527 kb on + strand, within pepB at 906.655 kb on + strand, within pepB at 906.688 kb on + strand, within pepB at 906.771 kb on - strand, within pepB at 906.854 kb on + strand at 906.867 kb on + strand at 906.879 kb on + strand at 906.899 kb on + strand at 906.905 kb on + strand at 906.910 kb on + strand at 906.910 kb on + strand at 906.910 kb on + strand at 906.913 kb on - strand at 906.918 kb on - strand at 906.976 kb on + strand at 907.162 kb on + strand, within SO0877 at 907.376 kb on + strand, within SO0877 at 907.376 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.549 kb on + strand, within SO0877 at 907.556 kb on + strand at 907.557 kb on - strand at 907.557 kb on - strand at 907.557 kb on - strand at 907.559 kb on + strand at 907.565 kb on - strand at 907.565 kb on - strand at 907.598 kb on + strand at 907.617 kb on - strand at 907.722 kb on + strand at 907.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 904,702 - -0.2 904,756 - -0.2 904,763 + +0.8 904,763 + +0.1 904,771 - +0.3 904,771 - +0.3 904,930 + sfsA SO0875 0.27 +0.7 904,938 - sfsA SO0875 0.28 +0.6 904,997 + sfsA SO0875 0.37 +0.2 905,137 - sfsA SO0875 0.56 +0.8 905,172 + sfsA SO0875 0.61 +0.2 905,172 + sfsA SO0875 0.61 -0.0 905,254 - sfsA SO0875 0.73 +0.2 905,268 + sfsA SO0875 0.75 +0.0 905,302 - sfsA SO0875 0.80 -0.0 905,433 - +0.2 905,438 + +0.0 905,497 + -0.2 905,619 + -0.2 905,688 - -0.5 905,723 + -0.7 905,731 - +0.3 905,738 + +0.1 905,791 + pepB SO0876 0.14 +1.2 905,846 + pepB SO0876 0.18 +2.2 905,882 + pepB SO0876 0.21 +0.4 905,972 + pepB SO0876 0.28 +0.7 905,988 - pepB SO0876 0.29 +0.2 906,044 - pepB SO0876 0.33 +0.0 906,202 + pepB SO0876 0.46 +0.5 906,203 + pepB SO0876 0.46 +0.7 906,299 + pepB SO0876 0.53 +0.6 906,299 + pepB SO0876 0.53 +0.1 906,299 + pepB SO0876 0.53 +0.0 906,307 - pepB SO0876 0.54 -0.1 906,307 - pepB SO0876 0.54 +1.0 906,307 - pepB SO0876 0.54 +0.5 906,368 - pepB SO0876 0.58 +1.2 906,396 + pepB SO0876 0.61 +1.1 906,444 - pepB SO0876 0.64 +0.4 906,527 + pepB SO0876 0.71 +1.1 906,655 + pepB SO0876 0.81 -0.4 906,688 + pepB SO0876 0.83 +0.0 906,771 - pepB SO0876 0.90 +0.2 906,854 + -0.0 906,867 + +0.1 906,879 + +0.1 906,899 + -0.5 906,905 + -0.6 906,910 + -0.1 906,910 + -0.5 906,910 + +1.0 906,913 - -0.4 906,918 - -1.4 906,976 + -0.3 907,162 + SO0877 0.14 +0.0 907,376 + SO0877 0.55 +2.2 907,376 + SO0877 0.55 +0.9 907,549 + SO0877 0.89 +0.2 907,549 + SO0877 0.89 +0.0 907,549 + SO0877 0.89 +0.7 907,556 + +0.2 907,557 - +0.1 907,557 - +0.9 907,557 - +0.2 907,559 + +0.8 907,565 - -1.0 907,565 - +0.4 907,598 + -0.2 907,617 - +0.4 907,722 + +0.5 907,739 + +0.1
Or see this region's nucleotide sequence