Strain Fitness in Shewanella oneidensis MR-1 around SO0415

Experiment: Gelatin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpilD and SO0415 are separated by 165 nucleotidesSO0415 and SO0416 are separated by 251 nucleotides SO0414: pilD - type 4 prepilin-like proteins leader peptide processing enzyme (NCBI ptt file), at 428,993 to 429,919 pilD SO0415: SO0415 - type IV pilus biogenesis protein PilC (NCBI ptt file), at 430,085 to 431,356 SO0415 SO0416: SO0416 - type IV pilus biogenesis protein PilB (NCBI ptt file), at 431,608 to 433,317 SO0416 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1 2at 429.105 kb on - strand, within pilDat 429.337 kb on + strand, within pilDat 429.355 kb on + strand, within pilDat 429.363 kb on - strand, within pilDat 429.511 kb on - strand, within pilDat 429.588 kb on - strand, within pilDat 429.588 kb on - strand, within pilDat 429.598 kb on - strand, within pilDat 429.688 kb on - strand, within pilDat 429.993 kb on - strandat 430.106 kb on - strandat 430.126 kb on - strandat 430.143 kb on - strandat 430.217 kb on - strand, within SO0415at 430.236 kb on + strand, within SO0415at 430.236 kb on + strand, within SO0415at 430.242 kb on + strand, within SO0415at 430.268 kb on + strand, within SO0415at 430.318 kb on + strand, within SO0415at 430.318 kb on + strand, within SO0415at 430.318 kb on + strand, within SO0415at 430.326 kb on - strand, within SO0415at 430.326 kb on - strand, within SO0415at 430.326 kb on - strand, within SO0415at 430.541 kb on + strand, within SO0415at 430.542 kb on + strand, within SO0415at 430.542 kb on + strand, within SO0415at 430.550 kb on - strand, within SO0415at 430.550 kb on - strand, within SO0415at 430.550 kb on - strand, within SO0415at 430.552 kb on + strand, within SO0415at 430.560 kb on - strand, within SO0415at 430.562 kb on - strand, within SO0415at 430.745 kb on + strand, within SO0415at 430.745 kb on + strand, within SO0415at 430.788 kb on + strand, within SO0415at 430.841 kb on + strand, within SO0415at 430.867 kb on + strand, within SO0415at 430.896 kb on - strand, within SO0415at 430.945 kb on + strand, within SO0415at 431.184 kb on - strand, within SO0415at 431.184 kb on - strand, within SO0415at 431.261 kb on + strandat 431.431 kb on - strandat 431.570 kb on + strandat 431.570 kb on + strandat 431.578 kb on - strandat 431.578 kb on - strandat 431.578 kb on - strandat 431.578 kb on - strandat 431.578 kb on - strandat 431.578 kb on - strandat 431.703 kb on + strandat 431.703 kb on - strandat 431.811 kb on + strand, within SO0416at 431.837 kb on + strand, within SO0416at 431.837 kb on + strand, within SO0416at 431.837 kb on + strand, within SO0416at 431.956 kb on - strand, within SO0416at 432.028 kb on + strand, within SO0416at 432.030 kb on - strand, within SO0416at 432.036 kb on - strand, within SO0416at 432.166 kb on + strand, within SO0416at 432.166 kb on + strand, within SO0416at 432.230 kb on + strand, within SO0416at 432.230 kb on + strand, within SO0416at 432.230 kb on + strand, within SO0416at 432.238 kb on - strand, within SO0416at 432.239 kb on - strand, within SO0416at 432.289 kb on + strand, within SO0416at 432.299 kb on + strand, within SO0416at 432.299 kb on + strand, within SO0416at 432.322 kb on - strand, within SO0416at 432.334 kb on - strand, within SO0416at 432.334 kb on - strand, within SO0416

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Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
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429,105 - pilD SO0414 0.12 -1.9
429,337 + pilD SO0414 0.37 -0.2
429,355 + pilD SO0414 0.39 -2.1
429,363 - pilD SO0414 0.40 -1.7
429,511 - pilD SO0414 0.56 -2.4
429,588 - pilD SO0414 0.64 -2.5
429,588 - pilD SO0414 0.64 +0.3
429,598 - pilD SO0414 0.65 -2.7
429,688 - pilD SO0414 0.75 +0.3
429,993 - -0.2
430,106 - +0.3
430,126 - -0.0
430,143 - +0.1
430,217 - SO0415 0.10 +0.6
430,236 + SO0415 0.12 +0.0
430,236 + SO0415 0.12 +0.0
430,242 + SO0415 0.12 +0.5
430,268 + SO0415 0.14 -0.5
430,318 + SO0415 0.18 -0.3
430,318 + SO0415 0.18 +0.3
430,318 + SO0415 0.18 -1.7
430,326 - SO0415 0.19 +0.5
430,326 - SO0415 0.19 -0.7
430,326 - SO0415 0.19 -0.2
430,541 + SO0415 0.36 -0.3
430,542 + SO0415 0.36 -0.8
430,542 + SO0415 0.36 -0.4
430,550 - SO0415 0.37 +0.0
430,550 - SO0415 0.37 -0.3
430,550 - SO0415 0.37 -0.3
430,552 + SO0415 0.37 +0.5
430,560 - SO0415 0.37 +0.7
430,562 - SO0415 0.38 +0.1
430,745 + SO0415 0.52 -0.5
430,745 + SO0415 0.52 +0.1
430,788 + SO0415 0.55 +0.1
430,841 + SO0415 0.59 -0.5
430,867 + SO0415 0.61 -0.1
430,896 - SO0415 0.64 -0.1
430,945 + SO0415 0.68 -0.3
431,184 - SO0415 0.86 -0.1
431,184 - SO0415 0.86 -1.1
431,261 + -0.8
431,431 - +0.4
431,570 + -0.5
431,570 + -0.3
431,578 - -0.1
431,578 - -0.4
431,578 - +0.5
431,578 - +0.3
431,578 - +0.3
431,578 - -0.2
431,703 + -0.3
431,703 - -0.1
431,811 + SO0416 0.12 -0.0
431,837 + SO0416 0.13 -0.7
431,837 + SO0416 0.13 -0.3
431,837 + SO0416 0.13 -0.2
431,956 - SO0416 0.20 -0.3
432,028 + SO0416 0.25 +0.2
432,030 - SO0416 0.25 -0.1
432,036 - SO0416 0.25 +0.3
432,166 + SO0416 0.33 -0.1
432,166 + SO0416 0.33 -0.5
432,230 + SO0416 0.36 +0.0
432,230 + SO0416 0.36 -0.0
432,230 + SO0416 0.36 -0.0
432,238 - SO0416 0.37 +0.2
432,239 - SO0416 0.37 -0.2
432,289 + SO0416 0.40 -0.7
432,299 + SO0416 0.40 +0.0
432,299 + SO0416 0.40 -1.2
432,322 - SO0416 0.42 +0.4
432,334 - SO0416 0.42 +2.4
432,334 - SO0416 0.42 -1.3

Or see this region's nucleotide sequence