Strain Fitness in Shewanella oneidensis MR-1 around SO0311

Experiment: Gelatin (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0308 and SO0309 are separated by 155 nucleotidesSO0309 and SO0311 are separated by 213 nucleotidesSO0311 and SO0312 are separated by 207 nucleotides SO0308: SO0308 - conserved hypothetical protein (NCBI ptt file), at 312,988 to 314,208 SO0308 SO0309: SO0309 - conserved hypothetical protein (NCBI ptt file), at 314,364 to 314,762 SO0309 SO0311: SO0311 - hypothetical Fe-S oxidoreductase (NCBI ptt file), at 314,976 to 317,336 SO0311 SO0312: SO0312 - outer membrane porin, putative (NCBI ptt file), at 317,544 to 318,698 SO0312 Position (kb) 314 315 316 317 318Strain fitness (log2 ratio) -2 -1 0 1 2at 313.996 kb on - strand, within SO0308at 314.052 kb on + strand, within SO0308at 314.090 kb on + strandat 314.488 kb on + strand, within SO0309at 314.644 kb on + strand, within SO0309at 314.691 kb on + strand, within SO0309at 314.699 kb on - strand, within SO0309at 314.742 kb on - strandat 314.742 kb on - strandat 314.763 kb on + strandat 314.777 kb on - strandat 314.777 kb on - strandat 314.815 kb on - strandat 314.892 kb on + strandat 314.902 kb on - strandat 314.902 kb on - strandat 315.011 kb on + strandat 315.026 kb on + strandat 315.097 kb on + strandat 315.119 kb on - strandat 315.170 kb on + strandat 315.179 kb on - strandat 315.234 kb on + strand, within SO0311at 315.296 kb on + strand, within SO0311at 315.304 kb on - strand, within SO0311at 315.585 kb on - strand, within SO0311at 315.607 kb on + strand, within SO0311at 315.613 kb on - strand, within SO0311at 315.615 kb on - strand, within SO0311at 315.622 kb on + strand, within SO0311at 315.622 kb on + strand, within SO0311at 315.627 kb on + strand, within SO0311at 315.630 kb on - strand, within SO0311at 315.630 kb on - strand, within SO0311at 315.659 kb on - strand, within SO0311at 315.664 kb on + strand, within SO0311at 315.813 kb on - strand, within SO0311at 315.849 kb on - strand, within SO0311at 315.937 kb on - strand, within SO0311at 315.937 kb on - strand, within SO0311at 315.956 kb on + strand, within SO0311at 315.956 kb on + strand, within SO0311at 316.001 kb on + strand, within SO0311at 316.124 kb on + strand, within SO0311at 316.179 kb on + strand, within SO0311at 316.179 kb on + strand, within SO0311at 316.187 kb on - strand, within SO0311at 316.251 kb on - strand, within SO0311at 316.411 kb on - strand, within SO0311at 316.514 kb on - strand, within SO0311at 316.514 kb on - strand, within SO0311at 316.653 kb on - strand, within SO0311at 316.726 kb on + strand, within SO0311at 316.726 kb on + strand, within SO0311at 316.734 kb on - strand, within SO0311at 316.734 kb on - strand, within SO0311at 316.742 kb on + strand, within SO0311at 316.750 kb on - strand, within SO0311at 316.766 kb on + strand, within SO0311at 316.808 kb on - strand, within SO0311at 316.820 kb on - strand, within SO0311at 316.839 kb on - strand, within SO0311at 316.843 kb on + strand, within SO0311at 316.952 kb on - strand, within SO0311at 316.953 kb on + strand, within SO0311at 317.075 kb on + strand, within SO0311at 317.106 kb on + strandat 317.189 kb on + strandat 317.189 kb on + strandat 317.189 kb on + strandat 317.197 kb on - strandat 317.243 kb on + strandat 317.243 kb on + strandat 317.253 kb on + strandat 317.256 kb on - strandat 317.258 kb on + strandat 317.261 kb on - strandat 317.266 kb on - strandat 317.281 kb on - strandat 317.286 kb on + strandat 317.294 kb on - strandat 317.309 kb on - strandat 317.335 kb on - strandat 317.390 kb on + strandat 317.490 kb on + strandat 317.498 kb on - strandat 317.498 kb on - strandat 317.574 kb on + strandat 317.574 kb on + strandat 317.652 kb on + strandat 317.683 kb on - strand, within SO0312at 317.743 kb on + strand, within SO0312at 317.746 kb on - strand, within SO0312at 317.753 kb on + strand, within SO0312at 317.801 kb on + strand, within SO0312at 317.809 kb on - strand, within SO0312at 317.830 kb on + strand, within SO0312at 317.973 kb on - strand, within SO0312at 317.974 kb on - strand, within SO0312at 317.976 kb on + strand, within SO0312at 318.002 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.045 kb on + strand, within SO0312at 318.048 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.053 kb on - strand, within SO0312at 318.104 kb on + strand, within SO0312at 318.159 kb on + strand, within SO0312at 318.167 kb on - strand, within SO0312at 318.167 kb on - strand, within SO0312at 318.209 kb on + strand, within SO0312at 318.214 kb on + strand, within SO0312at 318.233 kb on + strand, within SO0312at 318.240 kb on + strand, within SO0312at 318.254 kb on + strand, within SO0312at 318.289 kb on + strand, within SO0312at 318.289 kb on - strand, within SO0312

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gelatin (C)
remove
313,996 - SO0308 0.83 +0.1
314,052 + SO0308 0.87 -0.7
314,090 + -0.2
314,488 + SO0309 0.31 -0.1
314,644 + SO0309 0.70 +0.7
314,691 + SO0309 0.82 -0.5
314,699 - SO0309 0.84 +0.5
314,742 - -1.6
314,742 - +0.0
314,763 + +1.0
314,777 - +0.6
314,777 - -0.3
314,815 - -0.4
314,892 + +1.6
314,902 - +0.2
314,902 - +0.9
315,011 + +1.2
315,026 + +1.3
315,097 + +0.9
315,119 - +0.6
315,170 + +1.4
315,179 - +2.0
315,234 + SO0311 0.11 +2.6
315,296 + SO0311 0.14 -1.1
315,304 - SO0311 0.14 -0.3
315,585 - SO0311 0.26 +0.7
315,607 + SO0311 0.27 -0.4
315,613 - SO0311 0.27 -0.6
315,615 - SO0311 0.27 +0.3
315,622 + SO0311 0.27 +0.7
315,622 + SO0311 0.27 +0.5
315,627 + SO0311 0.28 +0.2
315,630 - SO0311 0.28 +0.3
315,630 - SO0311 0.28 -0.3
315,659 - SO0311 0.29 -0.2
315,664 + SO0311 0.29 -0.5
315,813 - SO0311 0.35 +0.2
315,849 - SO0311 0.37 +0.2
315,937 - SO0311 0.41 +1.1
315,937 - SO0311 0.41 +0.4
315,956 + SO0311 0.42 -0.3
315,956 + SO0311 0.42 +0.3
316,001 + SO0311 0.43 -0.4
316,124 + SO0311 0.49 +1.0
316,179 + SO0311 0.51 -0.1
316,179 + SO0311 0.51 +0.2
316,187 - SO0311 0.51 -0.9
316,251 - SO0311 0.54 +1.4
316,411 - SO0311 0.61 -0.0
316,514 - SO0311 0.65 +0.3
316,514 - SO0311 0.65 +0.8
316,653 - SO0311 0.71 -0.8
316,726 + SO0311 0.74 +0.6
316,726 + SO0311 0.74 +0.8
316,734 - SO0311 0.74 +0.3
316,734 - SO0311 0.74 +0.9
316,742 + SO0311 0.75 -1.2
316,750 - SO0311 0.75 +0.2
316,766 + SO0311 0.76 +0.4
316,808 - SO0311 0.78 +0.2
316,820 - SO0311 0.78 -0.9
316,839 - SO0311 0.79 -0.3
316,843 + SO0311 0.79 +1.2
316,952 - SO0311 0.84 +0.7
316,953 + SO0311 0.84 +1.0
317,075 + SO0311 0.89 -0.7
317,106 + +0.5
317,189 + +2.0
317,189 + +0.5
317,189 + +0.6
317,197 - -0.2
317,243 + +0.4
317,243 + +0.8
317,253 + +0.3
317,256 - +1.1
317,258 + +0.4
317,261 - +0.1
317,266 - -0.2
317,281 - +1.0
317,286 + +0.8
317,294 - +1.2
317,309 - -0.1
317,335 - +0.3
317,390 + -0.2
317,490 + +0.6
317,498 - +1.4
317,498 - +0.3
317,574 + +0.3
317,574 + +0.1
317,652 + -0.5
317,683 - SO0312 0.12 +1.6
317,743 + SO0312 0.17 +0.4
317,746 - SO0312 0.17 -0.5
317,753 + SO0312 0.18 +0.0
317,801 + SO0312 0.22 -0.3
317,809 - SO0312 0.23 +0.0
317,830 + SO0312 0.25 +0.6
317,973 - SO0312 0.37 +0.6
317,974 - SO0312 0.37 -0.2
317,976 + SO0312 0.37 -0.4
318,002 + SO0312 0.40 +0.6
318,045 + SO0312 0.43 -2.4
318,045 + SO0312 0.43 +0.4
318,045 + SO0312 0.43 +0.3
318,045 + SO0312 0.43 +1.2
318,045 + SO0312 0.43 +0.4
318,045 + SO0312 0.43 -1.2
318,045 + SO0312 0.43 +0.4
318,045 + SO0312 0.43 -0.3
318,045 + SO0312 0.43 +0.2
318,045 + SO0312 0.43 +0.8
318,045 + SO0312 0.43 +1.0
318,048 - SO0312 0.44 +0.4
318,053 - SO0312 0.44 +0.9
318,053 - SO0312 0.44 -0.6
318,053 - SO0312 0.44 +0.1
318,053 - SO0312 0.44 -0.8
318,053 - SO0312 0.44 +0.9
318,053 - SO0312 0.44 -1.1
318,104 + SO0312 0.48 -0.5
318,159 + SO0312 0.53 +0.3
318,167 - SO0312 0.54 +1.0
318,167 - SO0312 0.54 +0.2
318,209 + SO0312 0.58 +0.0
318,214 + SO0312 0.58 +1.1
318,233 + SO0312 0.60 +0.3
318,240 + SO0312 0.60 -1.0
318,254 + SO0312 0.61 +0.9
318,289 + SO0312 0.65 +0.1
318,289 - SO0312 0.65 -0.3

Or see this region's nucleotide sequence