Experiment: Gelatin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0130 and SO0131 are separated by 56 nucleotides SO0131 and SO0132 are separated by 101 nucleotides SO0132 and SO_0134 are separated by 230 nucleotides
SO0130: SO0130 - protease, putative (NCBI ptt file), at 137,207 to 140,014
SO0130
SO0131: SO0131 - hypothetical chorismate pyruvate lyase (NCBI ptt file), at 140,071 to 140,640
SO0131
SO0132: SO0132 - flagellar protein FliL, putative (NCBI ptt file), at 140,742 to 141,152
SO0132
SO_0134: SO_0134 - putative SAM-dependent methyltransferase (RefSeq), at 141,383 to 142,309
_0134
Position (kb) 140
141
142 Strain fitness (log2 ratio) -1
0
1
2
3 at 139.834 kb on + strand at 139.836 kb on + strand at 139.842 kb on + strand at 139.890 kb on + strand at 139.890 kb on + strand at 139.892 kb on - strand at 139.898 kb on - strand at 139.898 kb on - strand at 139.961 kb on - strand at 139.968 kb on + strand at 140.108 kb on + strand at 140.116 kb on - strand at 140.183 kb on - strand, within SO0131 at 140.356 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.398 kb on + strand, within SO0131 at 140.406 kb on - strand, within SO0131 at 140.406 kb on - strand, within SO0131 at 140.501 kb on - strand, within SO0131 at 140.501 kb on - strand, within SO0131 at 140.628 kb on - strand at 140.729 kb on + strand at 140.729 kb on + strand at 140.779 kb on + strand at 140.781 kb on + strand at 140.781 kb on + strand at 140.786 kb on + strand, within SO0132 at 140.786 kb on + strand, within SO0132 at 140.789 kb on - strand, within SO0132 at 140.789 kb on - strand, within SO0132 at 140.794 kb on - strand, within SO0132 at 140.963 kb on + strand, within SO0132 at 140.971 kb on - strand, within SO0132 at 141.005 kb on - strand, within SO0132 at 141.045 kb on + strand, within SO0132 at 141.074 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.101 kb on + strand, within SO0132 at 141.141 kb on - strand at 141.141 kb on - strand at 141.225 kb on + strand at 141.285 kb on - strand at 141.319 kb on + strand at 141.374 kb on - strand at 141.441 kb on - strand at 141.585 kb on + strand, within SO_0134 at 141.661 kb on + strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.781 kb on + strand, within SO_0134 at 141.888 kb on + strand, within SO_0134 at 141.895 kb on - strand, within SO_0134 at 141.934 kb on + strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.971 kb on - strand, within SO_0134 at 142.015 kb on - strand, within SO_0134 at 142.036 kb on + strand, within SO_0134 at 142.103 kb on + strand, within SO_0134 at 142.109 kb on + strand, within SO_0134 at 142.125 kb on + strand, within SO_0134
Per-strain Table
Position Strand Gene LocusTag Fraction Gelatin (C) remove 139,834 + -0.1 139,836 + +0.1 139,842 + +1.3 139,890 + +0.3 139,890 + -0.3 139,892 - +0.2 139,898 - +0.1 139,898 - -0.1 139,961 - -0.2 139,968 + +1.3 140,108 + +0.5 140,116 - +0.4 140,183 - SO0131 0.20 +0.4 140,356 + SO0131 0.50 +0.2 140,398 + SO0131 0.57 +0.4 140,398 + SO0131 0.57 +0.3 140,398 + SO0131 0.57 -0.8 140,398 + SO0131 0.57 +0.3 140,398 + SO0131 0.57 +0.3 140,398 + SO0131 0.57 +0.4 140,398 + SO0131 0.57 +0.2 140,398 + SO0131 0.57 -0.1 140,398 + SO0131 0.57 +0.7 140,406 - SO0131 0.59 -0.8 140,406 - SO0131 0.59 +1.0 140,501 - SO0131 0.75 +1.3 140,501 - SO0131 0.75 +0.2 140,628 - +0.6 140,729 + +2.3 140,729 + +3.1 140,779 + +2.8 140,781 + +3.0 140,781 + +2.2 140,786 + SO0132 0.11 +3.7 140,786 + SO0132 0.11 +2.5 140,789 - SO0132 0.11 +2.6 140,789 - SO0132 0.11 +2.6 140,794 - SO0132 0.13 +2.7 140,963 + SO0132 0.54 +3.2 140,971 - SO0132 0.56 +2.2 141,005 - SO0132 0.64 +2.6 141,045 + SO0132 0.74 +3.7 141,074 + SO0132 0.81 +2.6 141,101 + SO0132 0.87 +2.0 141,101 + SO0132 0.87 +2.2 141,101 + SO0132 0.87 +2.8 141,141 - +1.8 141,141 - +2.5 141,225 + +0.3 141,285 - -1.4 141,319 + +0.7 141,374 - +0.7 141,441 - +0.6 141,585 + SO_0134 0.22 +0.5 141,661 + SO_0134 0.30 +0.3 141,716 - SO_0134 0.36 -0.2 141,716 - SO_0134 0.36 +0.1 141,781 + SO_0134 0.43 -1.7 141,888 + SO_0134 0.54 -0.1 141,895 - SO_0134 0.55 +0.3 141,934 + SO_0134 0.59 -0.3 141,956 - SO_0134 0.62 -0.6 141,956 - SO_0134 0.62 -0.2 141,971 - SO_0134 0.63 +0.6 142,015 - SO_0134 0.68 +0.5 142,036 + SO_0134 0.70 -0.5 142,103 + SO_0134 0.78 -0.4 142,109 + SO_0134 0.78 +0.1 142,125 + SO_0134 0.80 +0.2
Or see this region's nucleotide sequence