Strain Fitness in Marinobacter adhaerens HP15 around HP15_951

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_949 and HP15_950 overlap by 4 nucleotidesHP15_950 and HP15_951 are separated by 107 nucleotidesHP15_951 and HP15_952 are separated by 88 nucleotides HP15_949: HP15_949 - conserved hypothetical protein, at 965,499 to 966,227 _949 HP15_950: HP15_950 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 966,224 to 966,832 _950 HP15_951: HP15_951 - transcriptional regulator, AraC family protein, at 966,940 to 967,950 _951 HP15_952: HP15_952 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein, at 968,039 to 969,652 _952 Position (kb) 966 967 968Strain fitness (log2 ratio) -1 0 1 2at 965.966 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.009 kb on + strand, within HP15_949at 966.017 kb on - strand, within HP15_949at 966.051 kb on - strand, within HP15_949at 966.056 kb on - strand, within HP15_949at 966.239 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.250 kb on + strandat 966.258 kb on - strandat 966.258 kb on - strandat 966.427 kb on + strand, within HP15_950at 966.580 kb on + strand, within HP15_950at 966.643 kb on - strand, within HP15_950at 966.754 kb on + strand, within HP15_950at 966.772 kb on - strandat 966.772 kb on - strandat 966.819 kb on + strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.917 kb on - strandat 966.942 kb on + strandat 967.106 kb on + strand, within HP15_951at 967.134 kb on - strand, within HP15_951at 967.135 kb on - strand, within HP15_951at 967.188 kb on - strand, within HP15_951at 967.212 kb on - strand, within HP15_951at 967.217 kb on - strand, within HP15_951at 967.294 kb on + strand, within HP15_951at 967.339 kb on - strand, within HP15_951at 967.348 kb on + strand, within HP15_951at 967.351 kb on - strand, within HP15_951at 967.397 kb on - strand, within HP15_951at 967.403 kb on + strand, within HP15_951at 967.456 kb on + strand, within HP15_951at 967.515 kb on - strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.519 kb on + strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.520 kb on - strand, within HP15_951at 967.527 kb on - strand, within HP15_951at 967.545 kb on + strand, within HP15_951at 967.669 kb on - strand, within HP15_951at 967.685 kb on - strand, within HP15_951at 967.782 kb on - strand, within HP15_951at 967.819 kb on + strand, within HP15_951at 967.885 kb on - strandat 967.910 kb on + strandat 967.989 kb on - strandat 968.013 kb on - strandat 968.128 kb on + strandat 968.128 kb on + strandat 968.130 kb on + strandat 968.137 kb on - strandat 968.285 kb on - strand, within HP15_952at 968.303 kb on + strand, within HP15_952at 968.362 kb on - strand, within HP15_952at 968.409 kb on - strand, within HP15_952at 968.509 kb on - strand, within HP15_952at 968.509 kb on - strand, within HP15_952at 968.692 kb on - strand, within HP15_952at 968.703 kb on + strand, within HP15_952at 968.749 kb on + strand, within HP15_952at 968.749 kb on + strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.757 kb on - strand, within HP15_952at 968.859 kb on - strand, within HP15_952at 968.931 kb on + strand, within HP15_952

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
965,966 + HP15_949 0.64 -0.6
966,009 + HP15_949 0.70 +0.5
966,009 + HP15_949 0.70 +1.7
966,009 + HP15_949 0.70 +1.1
966,009 + HP15_949 0.70 +0.7
966,009 + HP15_949 0.70 -0.0
966,009 + HP15_949 0.70 +0.4
966,009 + HP15_949 0.70 +0.0
966,009 + HP15_949 0.70 +0.4
966,009 + HP15_949 0.70 +0.6
966,009 + HP15_949 0.70 -0.6
966,017 - HP15_949 0.71 +0.1
966,051 - HP15_949 0.76 +0.3
966,056 - HP15_949 0.76 -0.6
966,239 + -0.1
966,250 + -0.1
966,250 + +0.9
966,250 + -0.2
966,250 + +1.7
966,250 + +0.5
966,258 - +1.1
966,258 - +0.6
966,427 + HP15_950 0.33 -1.6
966,580 + HP15_950 0.58 +0.8
966,643 - HP15_950 0.69 +1.4
966,754 + HP15_950 0.87 +0.9
966,772 - -0.0
966,772 - +1.2
966,819 + +0.1
966,917 - -0.6
966,917 - +1.0
966,917 - +0.3
966,917 - +0.1
966,942 + -0.5
967,106 + HP15_951 0.16 +0.5
967,134 - HP15_951 0.19 +0.8
967,135 - HP15_951 0.19 +0.8
967,188 - HP15_951 0.25 +0.6
967,212 - HP15_951 0.27 -0.4
967,217 - HP15_951 0.27 -0.3
967,294 + HP15_951 0.35 +0.3
967,339 - HP15_951 0.39 +1.0
967,348 + HP15_951 0.40 -0.4
967,351 - HP15_951 0.41 -0.3
967,397 - HP15_951 0.45 +1.1
967,403 + HP15_951 0.46 +0.3
967,456 + HP15_951 0.51 +0.7
967,515 - HP15_951 0.57 +2.4
967,519 + HP15_951 0.57 +2.3
967,519 + HP15_951 0.57 -0.6
967,520 - HP15_951 0.57 +0.7
967,520 - HP15_951 0.57 +0.5
967,527 - HP15_951 0.58 -0.0
967,545 + HP15_951 0.60 +0.4
967,669 - HP15_951 0.72 -0.1
967,685 - HP15_951 0.74 -0.2
967,782 - HP15_951 0.83 +0.8
967,819 + HP15_951 0.87 +0.4
967,885 - -0.0
967,910 + -0.5
967,989 - +0.1
968,013 - -0.1
968,128 + +0.8
968,128 + -0.1
968,130 + +0.1
968,137 - +0.1
968,285 - HP15_952 0.15 +0.5
968,303 + HP15_952 0.16 +0.1
968,362 - HP15_952 0.20 +0.2
968,409 - HP15_952 0.23 +1.8
968,509 - HP15_952 0.29 +1.6
968,509 - HP15_952 0.29 +0.1
968,692 - HP15_952 0.40 +0.5
968,703 + HP15_952 0.41 +0.9
968,749 + HP15_952 0.44 -0.3
968,749 + HP15_952 0.44 -0.2
968,757 - HP15_952 0.44 -0.7
968,757 - HP15_952 0.44 -0.5
968,757 - HP15_952 0.44 -0.1
968,757 - HP15_952 0.44 +1.1
968,859 - HP15_952 0.51 +0.6
968,931 + HP15_952 0.55 -0.3

Or see this region's nucleotide sequence