Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07700 and PGA1_c07710 overlap by 4 nucleotides PGA1_c07710 and PGA1_c07720 are separated by 37 nucleotides PGA1_c07720 and PGA1_c07730 are separated by 28 nucleotides PGA1_c07730 and PGA1_c07740 overlap by 4 nucleotides PGA1_c07740 and PGA1_c07750 overlap by 8 nucleotides
PGA1_c07700: PGA1_c07700 - putative sulfopyruvate decarboxylase subunit beta, at 798,556 to 799,110
_c07700
PGA1_c07710: PGA1_c07710 - putative sulfopyruvate decarboxylase subunit alpha, at 799,107 to 799,613
_c07710
PGA1_c07720: PGA1_c07720 - universal stress protein, at 799,651 to 800,061
_c07720
PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070
_c07730
PGA1_c07740: PGA1_c07740 - putative gluconate 5-dehydrogenase, at 801,067 to 801,828
_c07740
PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128
_c07750
Position (kb) 800
801
802 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 799.151 kb on - strand at 799.159 kb on + strand, within PGA1_c07710 at 799.376 kb on + strand, within PGA1_c07710 at 799.455 kb on + strand, within PGA1_c07710 at 799.468 kb on + strand, within PGA1_c07710 at 799.643 kb on + strand at 799.658 kb on - strand at 799.666 kb on + strand at 799.674 kb on - strand at 799.701 kb on - strand, within PGA1_c07720 at 799.759 kb on + strand, within PGA1_c07720 at 799.765 kb on + strand, within PGA1_c07720 at 799.773 kb on - strand, within PGA1_c07720 at 799.774 kb on + strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.787 kb on - strand, within PGA1_c07720 at 799.903 kb on + strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 799.938 kb on - strand, within PGA1_c07720 at 800.009 kb on + strand, within PGA1_c07720 at 800.012 kb on - strand, within PGA1_c07720 at 800.017 kb on - strand, within PGA1_c07720 at 800.076 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.081 kb on + strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.089 kb on - strand at 800.090 kb on - strand at 800.096 kb on - strand at 800.143 kb on - strand at 800.190 kb on - strand, within PGA1_c07730 at 800.193 kb on - strand, within PGA1_c07730 at 800.257 kb on + strand, within PGA1_c07730 at 800.258 kb on + strand, within PGA1_c07730 at 800.265 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.313 kb on - strand, within PGA1_c07730 at 800.339 kb on - strand, within PGA1_c07730 at 800.490 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.667 kb on + strand, within PGA1_c07730 at 800.729 kb on - strand, within PGA1_c07730 at 800.731 kb on + strand, within PGA1_c07730 at 800.786 kb on - strand, within PGA1_c07730 at 800.794 kb on + strand, within PGA1_c07730 at 800.924 kb on - strand, within PGA1_c07730 at 800.924 kb on - strand, within PGA1_c07730 at 800.984 kb on + strand at 801.029 kb on + strand at 801.085 kb on - strand at 801.139 kb on - strand at 801.198 kb on - strand, within PGA1_c07740 at 801.198 kb on - strand, within PGA1_c07740 at 801.241 kb on + strand, within PGA1_c07740 at 801.246 kb on + strand, within PGA1_c07740 at 801.266 kb on + strand, within PGA1_c07740 at 801.312 kb on - strand, within PGA1_c07740 at 801.386 kb on + strand, within PGA1_c07740 at 801.394 kb on - strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.447 kb on + strand, within PGA1_c07740 at 801.502 kb on + strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.519 kb on + strand, within PGA1_c07740 at 801.787 kb on + strand at 801.819 kb on + strand at 801.819 kb on + strand at 801.863 kb on - strand at 801.897 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 799,151 - -0.6 799,159 + PGA1_c07710 0.10 -1.9 799,376 + PGA1_c07710 0.53 -0.3 799,455 + PGA1_c07710 0.69 +1.4 799,468 + PGA1_c07710 0.71 -2.1 799,643 + -3.1 799,658 - -1.0 799,666 + +0.4 799,674 - +0.9 799,701 - PGA1_c07720 0.12 -0.6 799,759 + PGA1_c07720 0.26 -0.9 799,765 + PGA1_c07720 0.28 -1.9 799,773 - PGA1_c07720 0.30 +1.6 799,774 + PGA1_c07720 0.30 -1.1 799,787 - PGA1_c07720 0.33 +0.4 799,787 - PGA1_c07720 0.33 -0.8 799,903 + PGA1_c07720 0.61 -0.6 799,938 - PGA1_c07720 0.70 -1.9 799,938 - PGA1_c07720 0.70 +0.6 800,009 + PGA1_c07720 0.87 +1.0 800,012 - PGA1_c07720 0.88 +0.9 800,017 - PGA1_c07720 0.89 -0.6 800,076 + -1.1 800,081 + +0.4 800,081 + -0.6 800,081 + +0.7 800,081 + +0.4 800,081 + +3.0 800,081 + -2.4 800,081 + +0.4 800,081 + -0.6 800,081 + -0.6 800,089 - -2.1 800,089 - +1.4 800,089 - -0.8 800,089 - -0.9 800,090 - +0.2 800,096 - -0.2 800,143 - +1.0 800,190 - PGA1_c07730 0.10 -1.4 800,193 - PGA1_c07730 0.10 +0.4 800,257 + PGA1_c07730 0.17 -2.9 800,258 + PGA1_c07730 0.17 +0.4 800,265 - PGA1_c07730 0.18 -0.4 800,313 - PGA1_c07730 0.23 -0.7 800,313 - PGA1_c07730 0.23 -0.8 800,339 - PGA1_c07730 0.25 -0.8 800,490 + PGA1_c07730 0.41 -0.6 800,667 + PGA1_c07730 0.59 -0.6 800,667 + PGA1_c07730 0.59 -2.1 800,667 + PGA1_c07730 0.59 -0.1 800,729 - PGA1_c07730 0.65 -0.3 800,731 + PGA1_c07730 0.65 -1.9 800,786 - PGA1_c07730 0.71 +1.0 800,794 + PGA1_c07730 0.72 +0.7 800,924 - PGA1_c07730 0.85 -1.1 800,924 - PGA1_c07730 0.85 -1.6 800,984 + +0.4 801,029 + -0.5 801,085 - -2.4 801,139 - -2.1 801,198 - PGA1_c07740 0.17 +1.0 801,198 - PGA1_c07740 0.17 +0.5 801,241 + PGA1_c07740 0.23 -0.9 801,246 + PGA1_c07740 0.23 -2.5 801,266 + PGA1_c07740 0.26 -0.4 801,312 - PGA1_c07740 0.32 -0.9 801,386 + PGA1_c07740 0.42 -1.1 801,394 - PGA1_c07740 0.43 -1.1 801,442 + PGA1_c07740 0.49 +0.5 801,442 + PGA1_c07740 0.49 +2.0 801,447 + PGA1_c07740 0.50 +1.0 801,502 + PGA1_c07740 0.57 -1.1 801,510 - PGA1_c07740 0.58 -2.7 801,510 - PGA1_c07740 0.58 -1.9 801,517 - PGA1_c07740 0.59 +0.5 801,517 - PGA1_c07740 0.59 -0.9 801,519 + PGA1_c07740 0.59 -1.4 801,787 + -0.3 801,819 + +0.5 801,819 + -1.4 801,863 - +0.8 801,897 + -0.9
Or see this region's nucleotide sequence