Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_71 and HP15_72 are separated by 126 nucleotides
HP15_71: HP15_71 - hypothetical protein, at 79,518 to 79,655
_71
HP15_72: HP15_72 - conserved hypothetical protein, at 79,782 to 80,045
_72
Position (kb)
79
80 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 78.585 kb on + strand at 78.593 kb on - strand at 78.610 kb on - strand at 78.625 kb on - strand at 78.640 kb on + strand at 78.648 kb on - strand at 78.680 kb on - strand at 78.699 kb on + strand at 78.710 kb on + strand at 78.732 kb on - strand at 78.797 kb on - strand at 78.902 kb on + strand at 78.940 kb on - strand at 78.958 kb on - strand at 79.020 kb on - strand at 79.032 kb on + strand at 79.089 kb on + strand at 79.101 kb on + strand at 79.157 kb on + strand at 79.239 kb on + strand at 79.247 kb on - strand at 79.256 kb on - strand at 79.274 kb on + strand at 79.274 kb on + strand at 79.277 kb on - strand at 79.329 kb on - strand at 79.354 kb on - strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.381 kb on + strand at 79.389 kb on - strand at 79.421 kb on - strand at 79.421 kb on - strand at 79.498 kb on + strand at 79.506 kb on - strand at 79.516 kb on - strand at 79.525 kb on + strand at 79.528 kb on - strand at 79.582 kb on + strand, within HP15_71 at 79.607 kb on + strand, within HP15_71 at 79.638 kb on + strand, within HP15_71 at 79.671 kb on - strand at 79.801 kb on - strand at 79.819 kb on + strand, within HP15_72 at 79.820 kb on + strand, within HP15_72 at 79.827 kb on - strand, within HP15_72 at 79.838 kb on + strand, within HP15_72 at 79.843 kb on + strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.877 kb on - strand, within HP15_72 at 79.954 kb on - strand, within HP15_72 at 80.050 kb on + strand at 80.050 kb on + strand at 80.050 kb on + strand at 80.053 kb on + strand at 80.053 kb on + strand at 80.110 kb on + strand at 80.111 kb on + strand at 80.130 kb on + strand at 80.138 kb on - strand at 80.267 kb on + strand at 80.309 kb on + strand at 80.347 kb on + strand at 80.419 kb on + strand at 80.419 kb on + strand at 80.427 kb on - strand at 80.444 kb on + strand at 80.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 78,585 + +0.8 78,593 - +0.1 78,610 - +0.1 78,625 - -0.7 78,640 + -0.3 78,648 - +0.6 78,680 - -0.0 78,699 + +0.3 78,710 + -0.9 78,732 - -0.8 78,797 - +0.1 78,902 + -0.8 78,940 - -1.6 78,958 - -0.4 79,020 - +0.1 79,032 + -0.7 79,089 + -0.3 79,101 + +0.1 79,157 + -0.5 79,239 + +0.2 79,247 - -0.6 79,256 - +0.2 79,274 + +0.4 79,274 + -2.9 79,277 - +0.3 79,329 - -0.2 79,354 - -0.6 79,381 + +1.2 79,381 + -0.0 79,381 + +0.0 79,381 + -0.1 79,389 - -0.7 79,421 - +2.0 79,421 - +1.1 79,498 + -1.8 79,506 - -0.1 79,516 - -0.2 79,525 + +0.3 79,528 - -0.9 79,582 + HP15_71 0.46 +1.8 79,607 + HP15_71 0.64 +0.2 79,638 + HP15_71 0.87 +0.3 79,671 - +1.0 79,801 - +0.5 79,819 + HP15_72 0.14 -0.5 79,820 + HP15_72 0.14 -0.3 79,827 - HP15_72 0.17 +0.1 79,838 + HP15_72 0.21 -0.7 79,843 + HP15_72 0.23 +0.2 79,877 - HP15_72 0.36 -0.4 79,877 - HP15_72 0.36 +0.6 79,877 - HP15_72 0.36 -1.2 79,954 - HP15_72 0.65 +0.8 80,050 + -1.4 80,050 + +1.8 80,050 + -0.1 80,053 + -0.8 80,053 + +0.3 80,110 + -0.2 80,111 + -0.5 80,130 + +0.1 80,138 - +0.4 80,267 + +0.8 80,309 + +1.0 80,347 + -0.9 80,419 + +0.3 80,419 + +0.5 80,427 - -0.6 80,444 + -0.1 80,444 + +0.6
Or see this region's nucleotide sequence