Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06810

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06790 and PGA1_c06800 overlap by 1 nucleotidesPGA1_c06800 and PGA1_c06810 overlap by 1 nucleotidesPGA1_c06810 and PGA1_c06820 overlap by 4 nucleotidesPGA1_c06820 and PGA1_c06830 are separated by 18 nucleotides PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138 _c06790 PGA1_c06800: PGA1_c06800 - dipeptide transport system permease protein DppC, at 700,138 to 701,052 _c06800 PGA1_c06810: PGA1_c06810 - putative dipeptide transport ATP-binding protein DppD, at 701,052 to 702,032 _c06810 PGA1_c06820: PGA1_c06820 - dipeptide transport ATP-binding protein DppF, at 702,029 to 702,994 _c06820 PGA1_c06830: PGA1_c06830 - Predicted Zn-dependent hydrolases of the beta-lactamase fold, at 703,013 to 703,909 _c06830 Position (kb) 701 702 703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 700.108 kb on + strandat 700.117 kb on + strandat 700.123 kb on + strandat 700.123 kb on + strandat 700.136 kb on - strandat 700.163 kb on - strandat 700.171 kb on - strandat 700.222 kb on + strandat 700.226 kb on - strandat 700.227 kb on + strandat 700.286 kb on + strand, within PGA1_c06800at 700.286 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.292 kb on + strand, within PGA1_c06800at 700.300 kb on - strand, within PGA1_c06800at 700.367 kb on + strand, within PGA1_c06800at 700.367 kb on - strand, within PGA1_c06800at 700.425 kb on + strand, within PGA1_c06800at 700.458 kb on + strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.467 kb on - strand, within PGA1_c06800at 700.474 kb on - strand, within PGA1_c06800at 700.540 kb on + strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.561 kb on - strand, within PGA1_c06800at 700.595 kb on + strand, within PGA1_c06800at 700.595 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.603 kb on - strand, within PGA1_c06800at 700.686 kb on + strand, within PGA1_c06800at 700.743 kb on + strand, within PGA1_c06800at 700.784 kb on + strand, within PGA1_c06800at 700.785 kb on + strand, within PGA1_c06800at 700.795 kb on - strand, within PGA1_c06800at 700.827 kb on - strand, within PGA1_c06800at 700.860 kb on - strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.921 kb on + strand, within PGA1_c06800at 700.935 kb on + strand, within PGA1_c06800at 700.945 kb on - strand, within PGA1_c06800at 700.955 kb on - strand, within PGA1_c06800at 700.977 kb on - strandat 700.977 kb on - strandat 700.980 kb on + strandat 700.985 kb on + strandat 700.987 kb on - strandat 700.993 kb on - strandat 700.993 kb on - strandat 701.008 kb on - strandat 701.010 kb on + strandat 701.062 kb on - strandat 701.122 kb on - strandat 701.122 kb on - strandat 701.132 kb on + strandat 701.190 kb on + strand, within PGA1_c06810at 701.193 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.203 kb on - strand, within PGA1_c06810at 701.367 kb on - strand, within PGA1_c06810at 701.413 kb on + strand, within PGA1_c06810at 701.423 kb on + strand, within PGA1_c06810at 701.428 kb on + strand, within PGA1_c06810at 701.431 kb on - strand, within PGA1_c06810at 701.436 kb on - strand, within PGA1_c06810at 701.437 kb on - strand, within PGA1_c06810at 701.438 kb on - strand, within PGA1_c06810at 701.484 kb on + strand, within PGA1_c06810at 701.532 kb on + strand, within PGA1_c06810at 701.558 kb on - strand, within PGA1_c06810at 701.592 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.602 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.650 kb on - strand, within PGA1_c06810at 701.657 kb on - strand, within PGA1_c06810at 701.668 kb on + strand, within PGA1_c06810at 701.676 kb on - strand, within PGA1_c06810at 701.689 kb on + strand, within PGA1_c06810at 701.696 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.697 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.738 kb on - strand, within PGA1_c06810at 701.769 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.798 kb on + strand, within PGA1_c06810at 701.806 kb on - strand, within PGA1_c06810at 701.821 kb on + strand, within PGA1_c06810at 702.053 kb on + strandat 702.056 kb on - strandat 702.077 kb on + strandat 702.148 kb on - strand, within PGA1_c06820at 702.160 kb on + strand, within PGA1_c06820at 702.168 kb on + strand, within PGA1_c06820at 702.195 kb on + strand, within PGA1_c06820at 702.203 kb on - strand, within PGA1_c06820at 702.283 kb on - strand, within PGA1_c06820at 702.297 kb on + strand, within PGA1_c06820at 702.403 kb on - strand, within PGA1_c06820at 702.412 kb on + strand, within PGA1_c06820at 702.520 kb on + strand, within PGA1_c06820at 702.541 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.611 kb on + strand, within PGA1_c06820at 702.612 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.619 kb on - strand, within PGA1_c06820at 702.650 kb on - strand, within PGA1_c06820at 702.669 kb on + strand, within PGA1_c06820at 702.682 kb on - strand, within PGA1_c06820at 702.713 kb on - strand, within PGA1_c06820at 702.760 kb on + strand, within PGA1_c06820at 702.778 kb on - strand, within PGA1_c06820at 702.780 kb on + strand, within PGA1_c06820at 702.828 kb on + strand, within PGA1_c06820at 702.836 kb on - strand, within PGA1_c06820at 702.840 kb on + strand, within PGA1_c06820at 702.871 kb on - strand, within PGA1_c06820at 702.923 kb on - strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.925 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.927 kb on + strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.933 kb on - strandat 702.934 kb on + strandat 702.935 kb on - strandat 702.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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700,108 + -0.1
700,117 + +1.5
700,123 + -0.0
700,123 + +1.8
700,136 - -3.0
700,163 - +0.0
700,171 - +0.4
700,222 + -0.8
700,226 - -0.7
700,227 + +1.8
700,286 + PGA1_c06800 0.16 +0.1
700,286 + PGA1_c06800 0.16 +1.5
700,292 + PGA1_c06800 0.17 +0.0
700,292 + PGA1_c06800 0.17 +0.5
700,292 + PGA1_c06800 0.17 -0.7
700,292 + PGA1_c06800 0.17 +1.0
700,292 + PGA1_c06800 0.17 -1.8
700,292 + PGA1_c06800 0.17 -1.9
700,300 - PGA1_c06800 0.18 -1.5
700,367 + PGA1_c06800 0.25 -1.6
700,367 - PGA1_c06800 0.25 +1.2
700,425 + PGA1_c06800 0.31 +0.2
700,458 + PGA1_c06800 0.35 -0.4
700,467 - PGA1_c06800 0.36 -0.9
700,467 - PGA1_c06800 0.36 -1.6
700,474 - PGA1_c06800 0.37 -0.0
700,540 + PGA1_c06800 0.44 +1.2
700,561 - PGA1_c06800 0.46 -2.3
700,561 - PGA1_c06800 0.46 +2.6
700,595 + PGA1_c06800 0.50 +0.5
700,595 - PGA1_c06800 0.50 +0.1
700,603 - PGA1_c06800 0.51 -1.1
700,603 - PGA1_c06800 0.51 -1.1
700,686 + PGA1_c06800 0.60 +0.3
700,743 + PGA1_c06800 0.66 +1.6
700,784 + PGA1_c06800 0.71 -0.4
700,785 + PGA1_c06800 0.71 -0.6
700,795 - PGA1_c06800 0.72 -1.3
700,827 - PGA1_c06800 0.75 -3.2
700,860 - PGA1_c06800 0.79 +0.3
700,921 + PGA1_c06800 0.86 +0.5
700,921 + PGA1_c06800 0.86 -0.3
700,921 + PGA1_c06800 0.86 -0.1
700,935 + PGA1_c06800 0.87 +1.1
700,945 - PGA1_c06800 0.88 +1.4
700,955 - PGA1_c06800 0.89 +0.1
700,977 - +1.8
700,977 - -1.0
700,980 + -0.4
700,985 + -1.1
700,987 - +0.5
700,993 - +0.7
700,993 - +0.7
701,008 - -2.0
701,010 + +0.9
701,062 - -0.2
701,122 - -0.1
701,122 - +0.8
701,132 + +2.5
701,190 + PGA1_c06810 0.14 -0.0
701,193 - PGA1_c06810 0.14 +0.4
701,203 - PGA1_c06810 0.15 +0.1
701,203 - PGA1_c06810 0.15 +0.0
701,367 - PGA1_c06810 0.32 -0.2
701,413 + PGA1_c06810 0.37 -0.2
701,423 + PGA1_c06810 0.38 -0.5
701,428 + PGA1_c06810 0.38 -1.2
701,431 - PGA1_c06810 0.39 +0.2
701,436 - PGA1_c06810 0.39 -2.1
701,437 - PGA1_c06810 0.39 +0.9
701,438 - PGA1_c06810 0.39 -0.5
701,484 + PGA1_c06810 0.44 -0.3
701,532 + PGA1_c06810 0.49 -0.5
701,558 - PGA1_c06810 0.52 -0.2
701,592 - PGA1_c06810 0.55 -0.5
701,602 - PGA1_c06810 0.56 +0.9
701,602 - PGA1_c06810 0.56 -0.6
701,602 - PGA1_c06810 0.56 -0.2
701,650 - PGA1_c06810 0.61 +1.3
701,650 - PGA1_c06810 0.61 -0.8
701,657 - PGA1_c06810 0.62 -0.8
701,668 + PGA1_c06810 0.63 -0.7
701,676 - PGA1_c06810 0.64 +1.2
701,689 + PGA1_c06810 0.65 +0.3
701,696 - PGA1_c06810 0.66 -0.4
701,697 - PGA1_c06810 0.66 -1.2
701,697 - PGA1_c06810 0.66 +0.0
701,738 - PGA1_c06810 0.70 -0.4
701,738 - PGA1_c06810 0.70 -0.3
701,769 + PGA1_c06810 0.73 -2.7
701,798 + PGA1_c06810 0.76 +0.0
701,798 + PGA1_c06810 0.76 +0.2
701,806 - PGA1_c06810 0.77 -0.5
701,821 + PGA1_c06810 0.78 -0.2
702,053 + -1.9
702,056 - -0.7
702,077 + -0.5
702,148 - PGA1_c06820 0.12 -0.0
702,160 + PGA1_c06820 0.14 +1.3
702,168 + PGA1_c06820 0.14 -2.8
702,195 + PGA1_c06820 0.17 -0.1
702,203 - PGA1_c06820 0.18 -0.5
702,283 - PGA1_c06820 0.26 -0.7
702,297 + PGA1_c06820 0.28 +1.1
702,403 - PGA1_c06820 0.39 +0.5
702,412 + PGA1_c06820 0.40 +1.2
702,520 + PGA1_c06820 0.51 -0.1
702,541 + PGA1_c06820 0.53 -0.4
702,611 + PGA1_c06820 0.60 -0.2
702,611 + PGA1_c06820 0.60 -0.3
702,612 - PGA1_c06820 0.60 -0.2
702,619 - PGA1_c06820 0.61 +0.4
702,619 - PGA1_c06820 0.61 +0.1
702,650 - PGA1_c06820 0.64 -0.3
702,669 + PGA1_c06820 0.66 +0.2
702,682 - PGA1_c06820 0.68 -2.1
702,713 - PGA1_c06820 0.71 -0.1
702,760 + PGA1_c06820 0.76 -0.5
702,778 - PGA1_c06820 0.78 +1.5
702,780 + PGA1_c06820 0.78 +0.7
702,828 + PGA1_c06820 0.83 +1.0
702,836 - PGA1_c06820 0.84 +0.3
702,840 + PGA1_c06820 0.84 +0.5
702,871 - PGA1_c06820 0.87 -0.8
702,923 - +0.3
702,925 + -0.9
702,925 + -0.5
702,925 + +0.1
702,927 + -0.2
702,927 + -0.1
702,927 + -0.9
702,933 - -1.5
702,933 - -0.1
702,933 - +0.9
702,934 + +0.4
702,935 - +2.5
702,997 - -0.7

Or see this region's nucleotide sequence