Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06780 and PGA1_c06790 are separated by 112 nucleotides
PGA1_c06780: PGA1_c06780 - putative extracellular solute-binding protein, at 697,465 to 699,045
_c06780
PGA1_c06790: PGA1_c06790 - putative peptide ABC transporter, permease protein, at 699,158 to 700,138
_c06790
Position (kb) 697
698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 696.479 kb on + strand at 696.492 kb on + strand at 696.492 kb on + strand at 696.495 kb on - strand at 696.500 kb on - strand at 696.500 kb on - strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.537 kb on + strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.545 kb on - strand at 696.550 kb on - strand at 696.575 kb on - strand at 696.594 kb on + strand at 696.596 kb on + strand at 696.598 kb on + strand at 696.598 kb on + strand at 696.602 kb on - strand at 696.604 kb on + strand at 696.606 kb on - strand at 696.606 kb on - strand at 696.675 kb on + strand at 696.721 kb on + strand at 696.727 kb on + strand at 696.727 kb on + strand at 696.729 kb on - strand at 696.735 kb on - strand at 696.737 kb on + strand at 696.796 kb on + strand at 696.804 kb on - strand at 696.817 kb on - strand at 696.853 kb on - strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.855 kb on + strand at 696.863 kb on - strand at 696.901 kb on - strand at 696.912 kb on + strand at 696.912 kb on + strand at 696.920 kb on + strand at 696.922 kb on + strand at 696.969 kb on - strand at 696.999 kb on - strand at 696.999 kb on - strand at 697.050 kb on + strand at 697.050 kb on + strand at 697.134 kb on + strand at 697.147 kb on + strand at 697.158 kb on - strand at 697.158 kb on - strand at 697.180 kb on - strand at 697.195 kb on - strand at 697.200 kb on - strand at 697.277 kb on + strand at 697.295 kb on - strand at 697.298 kb on + strand at 697.298 kb on + strand at 697.306 kb on - strand at 697.342 kb on - strand at 697.342 kb on - strand at 697.354 kb on + strand at 697.361 kb on + strand at 697.380 kb on + strand at 697.393 kb on - strand at 697.425 kb on + strand at 697.493 kb on - strand at 697.493 kb on - strand at 697.505 kb on + strand at 697.549 kb on + strand at 697.564 kb on - strand at 697.576 kb on - strand at 697.576 kb on - strand at 697.580 kb on - strand at 697.587 kb on + strand at 697.594 kb on + strand at 697.656 kb on - strand, within PGA1_c06780 at 697.661 kb on - strand, within PGA1_c06780 at 697.662 kb on + strand, within PGA1_c06780 at 697.678 kb on + strand, within PGA1_c06780 at 697.690 kb on - strand, within PGA1_c06780 at 697.718 kb on + strand, within PGA1_c06780 at 697.728 kb on + strand, within PGA1_c06780 at 697.754 kb on - strand, within PGA1_c06780 at 697.759 kb on + strand, within PGA1_c06780 at 697.767 kb on - strand, within PGA1_c06780 at 697.782 kb on - strand, within PGA1_c06780 at 697.861 kb on + strand, within PGA1_c06780 at 697.861 kb on + strand, within PGA1_c06780 at 697.866 kb on + strand, within PGA1_c06780 at 697.892 kb on + strand, within PGA1_c06780 at 697.892 kb on + strand, within PGA1_c06780 at 697.926 kb on + strand, within PGA1_c06780 at 697.934 kb on - strand, within PGA1_c06780 at 697.947 kb on - strand, within PGA1_c06780 at 698.027 kb on + strand, within PGA1_c06780 at 698.032 kb on + strand, within PGA1_c06780 at 698.035 kb on - strand, within PGA1_c06780 at 698.035 kb on - strand, within PGA1_c06780 at 698.036 kb on + strand, within PGA1_c06780 at 698.036 kb on + strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.044 kb on - strand, within PGA1_c06780 at 698.057 kb on + strand, within PGA1_c06780 at 698.096 kb on + strand, within PGA1_c06780 at 698.102 kb on + strand, within PGA1_c06780 at 698.120 kb on - strand, within PGA1_c06780 at 698.197 kb on + strand, within PGA1_c06780 at 698.218 kb on + strand, within PGA1_c06780 at 698.243 kb on + strand, within PGA1_c06780 at 698.257 kb on + strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.260 kb on - strand, within PGA1_c06780 at 698.269 kb on + strand, within PGA1_c06780 at 698.270 kb on - strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.272 kb on + strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.280 kb on - strand, within PGA1_c06780 at 698.302 kb on + strand, within PGA1_c06780 at 698.309 kb on - strand, within PGA1_c06780 at 698.377 kb on + strand, within PGA1_c06780 at 698.498 kb on - strand, within PGA1_c06780 at 698.541 kb on + strand, within PGA1_c06780 at 698.636 kb on - strand, within PGA1_c06780 at 698.643 kb on + strand, within PGA1_c06780 at 698.673 kb on + strand, within PGA1_c06780 at 698.705 kb on - strand, within PGA1_c06780 at 698.720 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.730 kb on + strand, within PGA1_c06780 at 698.735 kb on + strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.738 kb on - strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.740 kb on + strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.748 kb on - strand, within PGA1_c06780 at 698.772 kb on - strand, within PGA1_c06780 at 698.805 kb on - strand, within PGA1_c06780 at 698.815 kb on + strand, within PGA1_c06780 at 698.844 kb on - strand, within PGA1_c06780 at 698.897 kb on - strand at 698.927 kb on + strand at 698.937 kb on - strand at 698.961 kb on + strand at 698.966 kb on + strand at 698.967 kb on - strand at 698.972 kb on - strand at 699.004 kb on + strand at 699.022 kb on - strand at 699.063 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.068 kb on + strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.076 kb on - strand at 699.112 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.158 kb on + strand at 699.180 kb on + strand at 699.185 kb on + strand at 699.185 kb on + strand at 699.265 kb on - strand, within PGA1_c06790 at 699.277 kb on + strand, within PGA1_c06790 at 699.287 kb on + strand, within PGA1_c06790 at 699.305 kb on - strand, within PGA1_c06790 at 699.334 kb on - strand, within PGA1_c06790 at 699.349 kb on - strand, within PGA1_c06790 at 699.384 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.429 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.431 kb on - strand, within PGA1_c06790 at 699.447 kb on + strand, within PGA1_c06790 at 699.471 kb on - strand, within PGA1_c06790 at 699.508 kb on + strand, within PGA1_c06790 at 699.516 kb on - strand, within PGA1_c06790 at 699.521 kb on - strand, within PGA1_c06790 at 699.578 kb on + strand, within PGA1_c06790 at 699.636 kb on + strand, within PGA1_c06790 at 699.669 kb on + strand, within PGA1_c06790 at 699.678 kb on - strand, within PGA1_c06790 at 699.708 kb on + strand, within PGA1_c06790 at 699.732 kb on + strand, within PGA1_c06790 at 699.738 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.744 kb on + strand, within PGA1_c06790 at 699.746 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.752 kb on - strand, within PGA1_c06790 at 699.822 kb on - strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.874 kb on + strand, within PGA1_c06790 at 699.877 kb on - strand, within PGA1_c06790 at 699.879 kb on + strand, within PGA1_c06790 at 699.882 kb on + strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.882 kb on - strand, within PGA1_c06790 at 699.887 kb on - strand, within PGA1_c06790 at 699.908 kb on - strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.972 kb on + strand, within PGA1_c06790 at 699.980 kb on - strand, within PGA1_c06790 at 699.982 kb on + strand, within PGA1_c06790 at 700.007 kb on + strand, within PGA1_c06790
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 696,479 + -3.4 696,492 + -1.5 696,492 + -2.2 696,495 - -0.7 696,500 - -3.2 696,500 - -1.1 696,537 + -3.1 696,537 + -0.7 696,537 + -1.8 696,537 + -0.5 696,537 + -1.0 696,537 + -0.6 696,537 + -0.5 696,537 + -0.0 696,545 - -0.1 696,545 - +0.5 696,545 - +0.5 696,545 - +0.5 696,545 - -2.3 696,545 - +0.3 696,545 - -0.7 696,545 - -1.6 696,545 - -0.1 696,550 - -0.1 696,575 - -1.0 696,594 + -1.6 696,596 + -0.7 696,598 + +0.2 696,598 + -1.1 696,602 - -0.3 696,604 + -1.4 696,606 - -1.1 696,606 - -2.0 696,675 + -2.7 696,721 + +0.2 696,727 + -1.7 696,727 + +0.3 696,729 - -0.2 696,735 - +0.9 696,737 + -1.0 696,796 + +0.0 696,804 - +0.2 696,817 - +0.7 696,853 - -0.4 696,855 + -0.4 696,855 + +1.1 696,855 + -0.4 696,863 - -0.5 696,901 - -1.2 696,912 + -1.8 696,912 + -0.9 696,920 + -0.8 696,922 + -1.5 696,969 - -2.3 696,999 - -0.7 696,999 - -1.7 697,050 + +0.9 697,050 + +0.2 697,134 + -1.5 697,147 + -0.4 697,158 - -1.6 697,158 - -0.8 697,180 - +0.0 697,195 - -0.5 697,200 - -1.4 697,277 + -1.6 697,295 - -2.1 697,298 + -1.4 697,298 + -0.1 697,306 - -1.3 697,342 - -0.7 697,342 - -1.3 697,354 + -0.7 697,361 + +0.3 697,380 + +0.2 697,393 - -1.0 697,425 + +0.3 697,493 - -0.4 697,493 - -0.2 697,505 + +1.4 697,549 + -1.0 697,564 - -0.5 697,576 - +0.9 697,576 - +0.5 697,580 - -1.4 697,587 + +0.3 697,594 + +0.3 697,656 - PGA1_c06780 0.12 +0.0 697,661 - PGA1_c06780 0.12 -0.2 697,662 + PGA1_c06780 0.12 -0.2 697,678 + PGA1_c06780 0.13 -1.0 697,690 - PGA1_c06780 0.14 +0.1 697,718 + PGA1_c06780 0.16 -0.5 697,728 + PGA1_c06780 0.17 -0.5 697,754 - PGA1_c06780 0.18 -0.3 697,759 + PGA1_c06780 0.19 -2.1 697,767 - PGA1_c06780 0.19 +0.1 697,782 - PGA1_c06780 0.20 +0.2 697,861 + PGA1_c06780 0.25 +1.0 697,861 + PGA1_c06780 0.25 -0.3 697,866 + PGA1_c06780 0.25 -2.0 697,892 + PGA1_c06780 0.27 -0.3 697,892 + PGA1_c06780 0.27 -1.8 697,926 + PGA1_c06780 0.29 -0.3 697,934 - PGA1_c06780 0.30 -0.9 697,947 - PGA1_c06780 0.30 -2.5 698,027 + PGA1_c06780 0.36 +1.3 698,032 + PGA1_c06780 0.36 -0.1 698,035 - PGA1_c06780 0.36 -0.1 698,035 - PGA1_c06780 0.36 -1.0 698,036 + PGA1_c06780 0.36 +0.2 698,036 + PGA1_c06780 0.36 -2.1 698,044 - PGA1_c06780 0.37 -0.1 698,044 - PGA1_c06780 0.37 -0.4 698,044 - PGA1_c06780 0.37 -1.0 698,044 - PGA1_c06780 0.37 +0.2 698,057 + PGA1_c06780 0.37 -0.5 698,096 + PGA1_c06780 0.40 +1.1 698,102 + PGA1_c06780 0.40 +1.5 698,120 - PGA1_c06780 0.41 +2.5 698,197 + PGA1_c06780 0.46 +0.7 698,218 + PGA1_c06780 0.48 -0.8 698,243 + PGA1_c06780 0.49 -0.8 698,257 + PGA1_c06780 0.50 -0.2 698,260 - PGA1_c06780 0.50 -0.4 698,260 - PGA1_c06780 0.50 +1.7 698,260 - PGA1_c06780 0.50 -2.2 698,260 - PGA1_c06780 0.50 -0.7 698,260 - PGA1_c06780 0.50 -0.6 698,260 - PGA1_c06780 0.50 -0.8 698,269 + PGA1_c06780 0.51 +0.1 698,270 - PGA1_c06780 0.51 -0.5 698,272 + PGA1_c06780 0.51 -0.7 698,272 + PGA1_c06780 0.51 -0.8 698,280 - PGA1_c06780 0.52 +0.2 698,280 - PGA1_c06780 0.52 +0.5 698,302 + PGA1_c06780 0.53 +0.3 698,309 - PGA1_c06780 0.53 +1.5 698,377 + PGA1_c06780 0.58 -1.1 698,498 - PGA1_c06780 0.65 +1.2 698,541 + PGA1_c06780 0.68 -0.9 698,636 - PGA1_c06780 0.74 -2.0 698,643 + PGA1_c06780 0.75 -1.1 698,673 + PGA1_c06780 0.76 -0.2 698,705 - PGA1_c06780 0.78 +1.5 698,720 + PGA1_c06780 0.79 -1.1 698,730 + PGA1_c06780 0.80 -0.9 698,730 + PGA1_c06780 0.80 +0.1 698,730 + PGA1_c06780 0.80 +0.8 698,730 + PGA1_c06780 0.80 -0.8 698,730 + PGA1_c06780 0.80 +0.5 698,735 + PGA1_c06780 0.80 +1.5 698,738 - PGA1_c06780 0.81 +0.2 698,738 - PGA1_c06780 0.81 +0.5 698,738 - PGA1_c06780 0.81 -0.5 698,738 - PGA1_c06780 0.81 -1.6 698,738 - PGA1_c06780 0.81 -2.5 698,738 - PGA1_c06780 0.81 -1.3 698,738 - PGA1_c06780 0.81 +0.2 698,740 + PGA1_c06780 0.81 +2.7 698,740 + PGA1_c06780 0.81 -1.1 698,748 - PGA1_c06780 0.81 +0.1 698,748 - PGA1_c06780 0.81 -0.5 698,772 - PGA1_c06780 0.83 +0.1 698,805 - PGA1_c06780 0.85 +0.7 698,815 + PGA1_c06780 0.85 -2.3 698,844 - PGA1_c06780 0.87 +0.3 698,897 - +0.7 698,927 + +0.1 698,937 - -0.5 698,961 + -1.0 698,966 + +1.1 698,967 - -2.3 698,972 - -1.7 699,004 + -1.0 699,022 - -1.4 699,063 + -0.5 699,068 + -0.1 699,068 + +0.3 699,068 + -0.1 699,068 + +1.7 699,068 + -0.7 699,068 + +0.0 699,068 + -1.5 699,076 - -0.4 699,076 - -0.1 699,076 - -2.0 699,076 - -0.3 699,076 - -3.2 699,112 + -0.6 699,158 + +0.7 699,158 + +1.9 699,158 + -0.6 699,180 + +0.3 699,185 + -0.6 699,185 + -0.2 699,265 - PGA1_c06790 0.11 +0.1 699,277 + PGA1_c06790 0.12 -1.6 699,287 + PGA1_c06790 0.13 -0.8 699,305 - PGA1_c06790 0.15 -0.7 699,334 - PGA1_c06790 0.18 +2.7 699,349 - PGA1_c06790 0.19 +0.9 699,384 - PGA1_c06790 0.23 -0.6 699,429 - PGA1_c06790 0.28 +0.5 699,429 - PGA1_c06790 0.28 +0.0 699,431 - PGA1_c06790 0.28 +0.7 699,431 - PGA1_c06790 0.28 -0.9 699,431 - PGA1_c06790 0.28 +0.5 699,447 + PGA1_c06790 0.29 +0.2 699,471 - PGA1_c06790 0.32 -0.4 699,508 + PGA1_c06790 0.36 +0.7 699,516 - PGA1_c06790 0.36 +0.4 699,521 - PGA1_c06790 0.37 -1.5 699,578 + PGA1_c06790 0.43 +1.6 699,636 + PGA1_c06790 0.49 -0.2 699,669 + PGA1_c06790 0.52 +0.6 699,678 - PGA1_c06790 0.53 -1.1 699,708 + PGA1_c06790 0.56 -0.6 699,732 + PGA1_c06790 0.59 +0.7 699,738 + PGA1_c06790 0.59 -0.1 699,744 + PGA1_c06790 0.60 -0.1 699,744 + PGA1_c06790 0.60 -0.4 699,744 + PGA1_c06790 0.60 -0.5 699,744 + PGA1_c06790 0.60 -0.1 699,746 - PGA1_c06790 0.60 -0.2 699,752 - PGA1_c06790 0.61 -0.8 699,752 - PGA1_c06790 0.61 -0.4 699,752 - PGA1_c06790 0.61 -0.6 699,822 - PGA1_c06790 0.68 -0.5 699,874 + PGA1_c06790 0.73 +0.2 699,874 + PGA1_c06790 0.73 -1.0 699,877 - PGA1_c06790 0.73 -0.1 699,879 + PGA1_c06790 0.73 -0.9 699,882 + PGA1_c06790 0.74 -0.7 699,882 - PGA1_c06790 0.74 +1.4 699,882 - PGA1_c06790 0.74 -0.1 699,887 - PGA1_c06790 0.74 +0.5 699,908 - PGA1_c06790 0.76 +0.1 699,972 + PGA1_c06790 0.83 +2.2 699,972 + PGA1_c06790 0.83 -0.3 699,972 + PGA1_c06790 0.83 -0.6 699,972 + PGA1_c06790 0.83 -0.4 699,980 - PGA1_c06790 0.84 -0.1 699,982 + PGA1_c06790 0.84 -0.2 700,007 + PGA1_c06790 0.87 -0.6
Or see this region's nucleotide sequence