Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04730

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04710 and PGA1_c04720 are separated by 205 nucleotidesPGA1_c04720 and PGA1_c04730 are separated by 11 nucleotidesPGA1_c04730 and PGA1_c04740 are separated by 153 nucleotides PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403 _c04710 PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160 _c04720 PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474 _c04730 PGA1_c04740: PGA1_c04740 - phoH-like protein, at 465,628 to 466,635 _c04740 Position (kb) 465 466Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 464.206 kb on + strand, within PGA1_c04710at 464.214 kb on - strand, within PGA1_c04710at 464.214 kb on - strand, within PGA1_c04710at 464.216 kb on + strand, within PGA1_c04710at 464.224 kb on - strand, within PGA1_c04710at 464.286 kb on - strandat 464.294 kb on + strandat 464.355 kb on + strandat 464.530 kb on - strandat 464.530 kb on - strandat 464.530 kb on - strandat 464.533 kb on + strandat 464.533 kb on + strandat 464.541 kb on - strandat 464.541 kb on - strandat 464.541 kb on - strandat 464.556 kb on + strandat 464.577 kb on + strandat 464.577 kb on + strandat 464.579 kb on - strandat 464.584 kb on - strandat 464.599 kb on + strandat 464.607 kb on - strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.630 kb on + strandat 464.638 kb on - strandat 464.638 kb on - strandat 464.638 kb on - strandat 464.666 kb on - strand, within PGA1_c04720at 464.666 kb on - strand, within PGA1_c04720at 464.688 kb on + strand, within PGA1_c04720at 464.696 kb on - strand, within PGA1_c04720at 464.717 kb on - strand, within PGA1_c04720at 464.730 kb on - strand, within PGA1_c04720at 464.730 kb on - strand, within PGA1_c04720at 464.757 kb on - strand, within PGA1_c04720at 464.778 kb on + strand, within PGA1_c04720at 464.833 kb on + strand, within PGA1_c04720at 464.841 kb on + strand, within PGA1_c04720at 464.868 kb on - strand, within PGA1_c04720at 464.897 kb on + strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.905 kb on - strand, within PGA1_c04720at 464.976 kb on + strand, within PGA1_c04720at 464.984 kb on - strand, within PGA1_c04720at 465.025 kb on + strand, within PGA1_c04720at 465.057 kb on + strand, within PGA1_c04720at 465.065 kb on - strand, within PGA1_c04720at 465.070 kb on + strand, within PGA1_c04720at 465.078 kb on - strand, within PGA1_c04720at 465.130 kb on - strandat 465.154 kb on + strandat 465.162 kb on - strandat 465.162 kb on - strandat 465.164 kb on + strandat 465.195 kb on + strandat 465.201 kb on - strandat 465.267 kb on + strand, within PGA1_c04730at 465.282 kb on - strand, within PGA1_c04730at 465.287 kb on - strand, within PGA1_c04730at 465.350 kb on + strand, within PGA1_c04730at 465.401 kb on + strand, within PGA1_c04730at 465.455 kb on + strandat 465.473 kb on + strandat 465.481 kb on - strandat 465.481 kb on - strandat 465.481 kb on - strandat 465.481 kb on - strandat 465.483 kb on + strandat 465.491 kb on - strandat 465.517 kb on + strandat 465.574 kb on - strandat 465.574 kb on - strandat 465.676 kb on - strandat 465.853 kb on + strand, within PGA1_c04740at 465.872 kb on - strand, within PGA1_c04740at 465.881 kb on + strand, within PGA1_c04740at 465.889 kb on - strand, within PGA1_c04740at 465.928 kb on - strand, within PGA1_c04740at 465.941 kb on - strand, within PGA1_c04740at 465.960 kb on + strand, within PGA1_c04740at 465.984 kb on - strand, within PGA1_c04740at 466.008 kb on + strand, within PGA1_c04740at 466.080 kb on + strand, within PGA1_c04740at 466.094 kb on + strand, within PGA1_c04740at 466.151 kb on + strand, within PGA1_c04740at 466.174 kb on + strand, within PGA1_c04740at 466.253 kb on - strand, within PGA1_c04740at 466.311 kb on + strand, within PGA1_c04740at 466.343 kb on + strand, within PGA1_c04740at 466.343 kb on + strand, within PGA1_c04740at 466.353 kb on + strand, within PGA1_c04740at 466.353 kb on + strand, within PGA1_c04740at 466.353 kb on + strand, within PGA1_c04740at 466.353 kb on + strand, within PGA1_c04740at 466.361 kb on - strand, within PGA1_c04740at 466.361 kb on - strand, within PGA1_c04740at 466.361 kb on - strand, within PGA1_c04740at 466.361 kb on - strand, within PGA1_c04740at 466.371 kb on + strand, within PGA1_c04740at 466.436 kb on - strand, within PGA1_c04740at 466.457 kb on - strand, within PGA1_c04740at 466.469 kb on + strand, within PGA1_c04740

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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464,206 + PGA1_c04710 0.85 -0.7
464,214 - PGA1_c04710 0.86 -2.8
464,214 - PGA1_c04710 0.86 -1.1
464,216 + PGA1_c04710 0.86 +2.3
464,224 - PGA1_c04710 0.86 -0.6
464,286 - -0.1
464,294 + +0.5
464,355 + +0.8
464,530 - -0.8
464,530 - -0.5
464,530 - -0.7
464,533 + -0.6
464,533 + -0.1
464,541 - +0.4
464,541 - +0.3
464,541 - -0.5
464,556 + -0.7
464,577 + +0.6
464,577 + +1.0
464,579 - +1.6
464,584 - +2.4
464,599 + -0.4
464,607 - +0.1
464,630 + +0.4
464,630 + +0.5
464,630 + +0.5
464,630 + +0.2
464,638 - +0.8
464,638 - -0.4
464,638 - -1.5
464,666 - PGA1_c04720 0.10 +0.4
464,666 - PGA1_c04720 0.10 +0.5
464,688 + PGA1_c04720 0.14 -0.2
464,696 - PGA1_c04720 0.16 -0.5
464,717 - PGA1_c04720 0.20 -0.7
464,730 - PGA1_c04720 0.22 +1.3
464,730 - PGA1_c04720 0.22 +0.4
464,757 - PGA1_c04720 0.27 +2.2
464,778 + PGA1_c04720 0.31 -0.5
464,833 + PGA1_c04720 0.41 -0.7
464,841 + PGA1_c04720 0.42 +0.2
464,868 - PGA1_c04720 0.47 -0.6
464,897 + PGA1_c04720 0.52 -0.1
464,905 - PGA1_c04720 0.54 +0.6
464,905 - PGA1_c04720 0.54 -1.3
464,905 - PGA1_c04720 0.54 -2.1
464,905 - PGA1_c04720 0.54 -0.8
464,905 - PGA1_c04720 0.54 -1.0
464,976 + PGA1_c04720 0.66 -0.4
464,984 - PGA1_c04720 0.68 +1.7
465,025 + PGA1_c04720 0.75 +0.0
465,057 + PGA1_c04720 0.81 -0.2
465,065 - PGA1_c04720 0.83 +0.6
465,070 + PGA1_c04720 0.84 -0.1
465,078 - PGA1_c04720 0.85 -0.9
465,130 - -3.2
465,154 + +0.6
465,162 - -0.0
465,162 - +0.5
465,164 + +0.7
465,195 + -0.2
465,201 - -0.5
465,267 + PGA1_c04730 0.31 -1.2
465,282 - PGA1_c04730 0.36 +0.1
465,287 - PGA1_c04730 0.38 -0.3
465,350 + PGA1_c04730 0.59 -0.0
465,401 + PGA1_c04730 0.76 -1.1
465,455 + +0.1
465,473 + +0.5
465,481 - -0.4
465,481 - -0.0
465,481 - -0.4
465,481 - -0.6
465,483 + -0.8
465,491 - -0.4
465,517 + +2.0
465,574 - -1.4
465,574 - +1.0
465,676 - +0.4
465,853 + PGA1_c04740 0.22 -0.4
465,872 - PGA1_c04740 0.24 +0.2
465,881 + PGA1_c04740 0.25 +0.3
465,889 - PGA1_c04740 0.26 +1.2
465,928 - PGA1_c04740 0.30 +0.4
465,941 - PGA1_c04740 0.31 +1.1
465,960 + PGA1_c04740 0.33 +0.5
465,984 - PGA1_c04740 0.35 -0.5
466,008 + PGA1_c04740 0.38 -0.3
466,080 + PGA1_c04740 0.45 -1.2
466,094 + PGA1_c04740 0.46 +2.1
466,151 + PGA1_c04740 0.52 +0.9
466,174 + PGA1_c04740 0.54 +0.6
466,253 - PGA1_c04740 0.62 +0.8
466,311 + PGA1_c04740 0.68 +0.5
466,343 + PGA1_c04740 0.71 -1.1
466,343 + PGA1_c04740 0.71 +1.1
466,353 + PGA1_c04740 0.72 +1.3
466,353 + PGA1_c04740 0.72 +0.1
466,353 + PGA1_c04740 0.72 -0.6
466,353 + PGA1_c04740 0.72 +1.4
466,361 - PGA1_c04740 0.73 -1.7
466,361 - PGA1_c04740 0.73 +0.4
466,361 - PGA1_c04740 0.73 -1.0
466,361 - PGA1_c04740 0.73 +0.5
466,371 + PGA1_c04740 0.74 -1.3
466,436 - PGA1_c04740 0.80 -0.2
466,457 - PGA1_c04740 0.82 +0.7
466,469 + PGA1_c04740 0.83 -0.2

Or see this region's nucleotide sequence