Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04560

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04550 and PGA1_c04560 are separated by 146 nucleotidesPGA1_c04560 and PGA1_c04570 are separated by 182 nucleotides PGA1_c04550: PGA1_c04550 - putative formaldehyde dehydrogenase, at 447,685 to 448,776 _c04550 PGA1_c04560: PGA1_c04560 - putative fumarate lyase, at 448,923 to 450,272 _c04560 PGA1_c04570: PGA1_c04570 - putative 3-oxoadipate enol-lactonase, at 450,455 to 451,243 _c04570 Position (kb) 448 449 450 451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 447.970 kb on - strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 447.994 kb on + strand, within PGA1_c04550at 448.002 kb on - strand, within PGA1_c04550at 448.025 kb on + strand, within PGA1_c04550at 448.054 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.084 kb on + strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.092 kb on - strand, within PGA1_c04550at 448.183 kb on + strand, within PGA1_c04550at 448.219 kb on + strand, within PGA1_c04550at 448.224 kb on + strand, within PGA1_c04550at 448.248 kb on + strand, within PGA1_c04550at 448.256 kb on + strand, within PGA1_c04550at 448.271 kb on - strand, within PGA1_c04550at 448.294 kb on - strand, within PGA1_c04550at 448.297 kb on + strand, within PGA1_c04550at 448.302 kb on - strand, within PGA1_c04550at 448.382 kb on + strand, within PGA1_c04550at 448.412 kb on + strand, within PGA1_c04550at 448.448 kb on - strand, within PGA1_c04550at 448.521 kb on + strand, within PGA1_c04550at 448.531 kb on + strand, within PGA1_c04550at 448.535 kb on - strand, within PGA1_c04550at 448.541 kb on + strand, within PGA1_c04550at 448.546 kb on + strand, within PGA1_c04550at 448.573 kb on + strand, within PGA1_c04550at 448.607 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.632 kb on + strand, within PGA1_c04550at 448.640 kb on - strand, within PGA1_c04550at 448.804 kb on + strandat 448.813 kb on + strandat 448.816 kb on - strandat 448.916 kb on - strandat 449.029 kb on - strandat 449.077 kb on - strand, within PGA1_c04560at 449.077 kb on - strand, within PGA1_c04560at 449.084 kb on + strand, within PGA1_c04560at 449.087 kb on - strand, within PGA1_c04560at 449.124 kb on - strand, within PGA1_c04560at 449.129 kb on - strand, within PGA1_c04560at 449.165 kb on - strand, within PGA1_c04560at 449.199 kb on - strand, within PGA1_c04560at 449.200 kb on - strand, within PGA1_c04560at 449.200 kb on - strand, within PGA1_c04560at 449.337 kb on - strand, within PGA1_c04560at 449.358 kb on - strand, within PGA1_c04560at 449.363 kb on - strand, within PGA1_c04560at 449.370 kb on - strand, within PGA1_c04560at 449.397 kb on + strand, within PGA1_c04560at 449.410 kb on - strand, within PGA1_c04560at 449.456 kb on + strand, within PGA1_c04560at 449.463 kb on - strand, within PGA1_c04560at 449.464 kb on - strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.495 kb on + strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.503 kb on - strand, within PGA1_c04560at 449.530 kb on + strand, within PGA1_c04560at 449.530 kb on + strand, within PGA1_c04560at 449.535 kb on + strand, within PGA1_c04560at 449.542 kb on - strand, within PGA1_c04560at 449.543 kb on - strand, within PGA1_c04560at 449.544 kb on + strand, within PGA1_c04560at 449.548 kb on - strand, within PGA1_c04560at 449.648 kb on + strand, within PGA1_c04560at 449.706 kb on + strand, within PGA1_c04560at 449.714 kb on - strand, within PGA1_c04560at 449.751 kb on - strand, within PGA1_c04560at 449.801 kb on + strand, within PGA1_c04560at 449.801 kb on + strand, within PGA1_c04560at 449.801 kb on + strand, within PGA1_c04560at 449.809 kb on - strand, within PGA1_c04560at 449.811 kb on - strand, within PGA1_c04560at 449.821 kb on + strand, within PGA1_c04560at 449.837 kb on - strand, within PGA1_c04560at 449.838 kb on + strand, within PGA1_c04560at 449.882 kb on - strand, within PGA1_c04560at 449.883 kb on + strand, within PGA1_c04560at 449.891 kb on - strand, within PGA1_c04560at 449.929 kb on - strand, within PGA1_c04560at 449.931 kb on + strand, within PGA1_c04560at 449.939 kb on - strand, within PGA1_c04560at 449.939 kb on - strand, within PGA1_c04560at 449.942 kb on + strand, within PGA1_c04560at 449.978 kb on + strand, within PGA1_c04560at 449.991 kb on + strand, within PGA1_c04560at 450.008 kb on - strand, within PGA1_c04560at 450.068 kb on + strand, within PGA1_c04560at 450.083 kb on + strand, within PGA1_c04560at 450.090 kb on + strand, within PGA1_c04560at 450.096 kb on + strand, within PGA1_c04560at 450.104 kb on + strand, within PGA1_c04560at 450.133 kb on + strand, within PGA1_c04560at 450.146 kb on - strandat 450.153 kb on - strandat 450.160 kb on + strandat 450.160 kb on + strandat 450.204 kb on - strandat 450.206 kb on + strandat 450.238 kb on + strandat 450.246 kb on - strandat 450.252 kb on + strandat 450.280 kb on - strandat 450.292 kb on - strandat 450.312 kb on - strandat 450.313 kb on + strandat 450.318 kb on + strandat 450.318 kb on + strandat 450.318 kb on + strandat 450.318 kb on + strandat 450.318 kb on + strandat 450.326 kb on - strandat 450.326 kb on - strandat 450.326 kb on - strandat 450.326 kb on - strandat 450.326 kb on - strandat 450.331 kb on - strandat 450.351 kb on + strandat 450.418 kb on + strandat 450.426 kb on - strandat 450.434 kb on + strandat 450.434 kb on + strandat 450.442 kb on - strandat 450.464 kb on + strandat 450.472 kb on - strandat 450.475 kb on + strandat 450.514 kb on + strandat 450.534 kb on - strand, within PGA1_c04570at 450.534 kb on - strand, within PGA1_c04570at 450.762 kb on - strand, within PGA1_c04570at 450.791 kb on + strand, within PGA1_c04570at 450.799 kb on - strand, within PGA1_c04570at 450.813 kb on + strand, within PGA1_c04570at 450.836 kb on - strand, within PGA1_c04570at 450.885 kb on + strand, within PGA1_c04570at 450.885 kb on + strand, within PGA1_c04570at 450.885 kb on + strand, within PGA1_c04570at 450.893 kb on - strand, within PGA1_c04570at 450.893 kb on - strand, within PGA1_c04570at 450.893 kb on - strand, within PGA1_c04570at 450.893 kb on - strand, within PGA1_c04570at 450.895 kb on + strand, within PGA1_c04570at 450.895 kb on + strand, within PGA1_c04570at 450.895 kb on + strand, within PGA1_c04570at 450.895 kb on + strand, within PGA1_c04570at 450.895 kb on + strand, within PGA1_c04570at 450.903 kb on - strand, within PGA1_c04570at 450.903 kb on - strand, within PGA1_c04570at 450.903 kb on - strand, within PGA1_c04570at 450.908 kb on + strand, within PGA1_c04570at 450.916 kb on - strand, within PGA1_c04570at 450.975 kb on + strand, within PGA1_c04570at 450.988 kb on - strand, within PGA1_c04570at 450.988 kb on - strand, within PGA1_c04570at 451.005 kb on - strand, within PGA1_c04570at 451.033 kb on + strand, within PGA1_c04570at 451.060 kb on - strand, within PGA1_c04570at 451.060 kb on - strand, within PGA1_c04570at 451.067 kb on + strand, within PGA1_c04570at 451.152 kb on - strand, within PGA1_c04570at 451.169 kb on + strandat 451.169 kb on + strandat 451.172 kb on - strandat 451.177 kb on - strandat 451.177 kb on - strandat 451.177 kb on - strandat 451.186 kb on + strandat 451.191 kb on + strandat 451.191 kb on + strandat 451.231 kb on - strandat 451.248 kb on - strandat 451.260 kb on + strandat 451.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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447,970 - PGA1_c04550 0.26 -1.4
447,994 + PGA1_c04550 0.28 -0.9
447,994 + PGA1_c04550 0.28 -0.1
448,002 - PGA1_c04550 0.29 +0.5
448,025 + PGA1_c04550 0.31 +0.0
448,054 + PGA1_c04550 0.34 +0.5
448,084 + PGA1_c04550 0.37 +0.3
448,084 + PGA1_c04550 0.37 +1.1
448,084 + PGA1_c04550 0.37 +2.0
448,084 + PGA1_c04550 0.37 +0.3
448,084 + PGA1_c04550 0.37 -0.8
448,084 + PGA1_c04550 0.37 +0.0
448,084 + PGA1_c04550 0.37 +0.2
448,084 + PGA1_c04550 0.37 -0.2
448,084 + PGA1_c04550 0.37 +0.3
448,084 + PGA1_c04550 0.37 -0.5
448,084 + PGA1_c04550 0.37 -0.6
448,084 + PGA1_c04550 0.37 +0.5
448,084 + PGA1_c04550 0.37 -0.5
448,084 + PGA1_c04550 0.37 +1.1
448,092 - PGA1_c04550 0.37 +0.2
448,092 - PGA1_c04550 0.37 +0.1
448,092 - PGA1_c04550 0.37 -0.5
448,092 - PGA1_c04550 0.37 +0.3
448,092 - PGA1_c04550 0.37 +1.9
448,183 + PGA1_c04550 0.46 -0.1
448,219 + PGA1_c04550 0.49 +0.5
448,224 + PGA1_c04550 0.49 -1.1
448,248 + PGA1_c04550 0.52 +0.7
448,256 + PGA1_c04550 0.52 -0.4
448,271 - PGA1_c04550 0.54 -0.4
448,294 - PGA1_c04550 0.56 +0.2
448,297 + PGA1_c04550 0.56 +0.5
448,302 - PGA1_c04550 0.57 -0.5
448,382 + PGA1_c04550 0.64 -0.6
448,412 + PGA1_c04550 0.67 -0.1
448,448 - PGA1_c04550 0.70 -2.8
448,521 + PGA1_c04550 0.77 -0.1
448,531 + PGA1_c04550 0.77 -1.4
448,535 - PGA1_c04550 0.78 +0.0
448,541 + PGA1_c04550 0.78 +0.6
448,546 + PGA1_c04550 0.79 -0.3
448,573 + PGA1_c04550 0.81 +0.5
448,607 + PGA1_c04550 0.84 -0.7
448,632 + PGA1_c04550 0.87 -0.3
448,632 + PGA1_c04550 0.87 -0.4
448,640 - PGA1_c04550 0.87 +1.3
448,804 + -1.8
448,813 + -0.7
448,816 - +0.1
448,916 - -0.5
449,029 - +1.6
449,077 - PGA1_c04560 0.11 -0.9
449,077 - PGA1_c04560 0.11 +2.9
449,084 + PGA1_c04560 0.12 +0.5
449,087 - PGA1_c04560 0.12 -0.4
449,124 - PGA1_c04560 0.15 -0.4
449,129 - PGA1_c04560 0.15 +1.0
449,165 - PGA1_c04560 0.18 -0.5
449,199 - PGA1_c04560 0.20 +0.8
449,200 - PGA1_c04560 0.21 -1.0
449,200 - PGA1_c04560 0.21 +0.9
449,337 - PGA1_c04560 0.31 -0.3
449,358 - PGA1_c04560 0.32 +1.2
449,363 - PGA1_c04560 0.33 -0.7
449,370 - PGA1_c04560 0.33 +0.8
449,397 + PGA1_c04560 0.35 -1.8
449,410 - PGA1_c04560 0.36 -0.7
449,456 + PGA1_c04560 0.39 -0.1
449,463 - PGA1_c04560 0.40 +0.9
449,464 - PGA1_c04560 0.40 +1.0
449,495 + PGA1_c04560 0.42 +0.3
449,495 + PGA1_c04560 0.42 -0.1
449,495 + PGA1_c04560 0.42 -0.7
449,495 + PGA1_c04560 0.42 +0.8
449,495 + PGA1_c04560 0.42 -1.1
449,495 + PGA1_c04560 0.42 +2.0
449,495 + PGA1_c04560 0.42 +0.8
449,503 - PGA1_c04560 0.43 -1.2
449,503 - PGA1_c04560 0.43 +0.7
449,503 - PGA1_c04560 0.43 +0.5
449,530 + PGA1_c04560 0.45 +1.5
449,530 + PGA1_c04560 0.45 +0.4
449,535 + PGA1_c04560 0.45 -0.4
449,542 - PGA1_c04560 0.46 +0.4
449,543 - PGA1_c04560 0.46 +1.7
449,544 + PGA1_c04560 0.46 +0.5
449,548 - PGA1_c04560 0.46 -0.5
449,648 + PGA1_c04560 0.54 +1.1
449,706 + PGA1_c04560 0.58 -1.0
449,714 - PGA1_c04560 0.59 +0.9
449,751 - PGA1_c04560 0.61 +1.2
449,801 + PGA1_c04560 0.65 -0.3
449,801 + PGA1_c04560 0.65 +0.8
449,801 + PGA1_c04560 0.65 -1.3
449,809 - PGA1_c04560 0.66 -0.6
449,811 - PGA1_c04560 0.66 +0.3
449,821 + PGA1_c04560 0.67 +1.5
449,837 - PGA1_c04560 0.68 +0.1
449,838 + PGA1_c04560 0.68 +0.1
449,882 - PGA1_c04560 0.71 +0.9
449,883 + PGA1_c04560 0.71 +0.0
449,891 - PGA1_c04560 0.72 -0.6
449,929 - PGA1_c04560 0.75 +1.0
449,931 + PGA1_c04560 0.75 +1.9
449,939 - PGA1_c04560 0.75 -1.4
449,939 - PGA1_c04560 0.75 +0.2
449,942 + PGA1_c04560 0.75 -1.1
449,978 + PGA1_c04560 0.78 -0.1
449,991 + PGA1_c04560 0.79 +0.8
450,008 - PGA1_c04560 0.80 +0.9
450,068 + PGA1_c04560 0.85 -0.1
450,083 + PGA1_c04560 0.86 +0.4
450,090 + PGA1_c04560 0.86 +0.2
450,096 + PGA1_c04560 0.87 +0.6
450,104 + PGA1_c04560 0.87 +0.0
450,133 + PGA1_c04560 0.90 +1.4
450,146 - +0.1
450,153 - -0.1
450,160 + +1.0
450,160 + +0.7
450,204 - -0.4
450,206 + -0.7
450,238 + -0.3
450,246 - +1.0
450,252 + -0.5
450,280 - -0.3
450,292 - +0.2
450,312 - -0.5
450,313 + -1.5
450,318 + +0.6
450,318 + +0.2
450,318 + +1.3
450,318 + +0.5
450,318 + +0.1
450,326 - +0.7
450,326 - +0.4
450,326 - -1.3
450,326 - -0.4
450,326 - +1.0
450,331 - +0.4
450,351 + -1.2
450,418 + -0.5
450,426 - -0.1
450,434 + -0.1
450,434 + +1.0
450,442 - -0.3
450,464 + -0.8
450,472 - -1.2
450,475 + -0.1
450,514 + +1.2
450,534 - PGA1_c04570 0.10 -0.8
450,534 - PGA1_c04570 0.10 -0.7
450,762 - PGA1_c04570 0.39 +0.4
450,791 + PGA1_c04570 0.43 -0.2
450,799 - PGA1_c04570 0.44 +1.5
450,813 + PGA1_c04570 0.45 -0.2
450,836 - PGA1_c04570 0.48 -0.1
450,885 + PGA1_c04570 0.54 +0.2
450,885 + PGA1_c04570 0.54 -0.6
450,885 + PGA1_c04570 0.54 +0.2
450,893 - PGA1_c04570 0.56 -0.7
450,893 - PGA1_c04570 0.56 +0.4
450,893 - PGA1_c04570 0.56 +0.3
450,893 - PGA1_c04570 0.56 -0.4
450,895 + PGA1_c04570 0.56 -0.1
450,895 + PGA1_c04570 0.56 +1.4
450,895 + PGA1_c04570 0.56 +0.9
450,895 + PGA1_c04570 0.56 +1.1
450,895 + PGA1_c04570 0.56 +2.1
450,903 - PGA1_c04570 0.57 +0.1
450,903 - PGA1_c04570 0.57 +0.5
450,903 - PGA1_c04570 0.57 -0.4
450,908 + PGA1_c04570 0.57 -0.3
450,916 - PGA1_c04570 0.58 -0.4
450,975 + PGA1_c04570 0.66 +0.0
450,988 - PGA1_c04570 0.68 +0.3
450,988 - PGA1_c04570 0.68 +1.0
451,005 - PGA1_c04570 0.70 -0.0
451,033 + PGA1_c04570 0.73 +0.8
451,060 - PGA1_c04570 0.77 +0.5
451,060 - PGA1_c04570 0.77 -0.0
451,067 + PGA1_c04570 0.78 -1.1
451,152 - PGA1_c04570 0.88 -1.7
451,169 + +1.0
451,169 + -0.0
451,172 - +0.0
451,177 - +1.0
451,177 - +0.9
451,177 - +3.0
451,186 + -2.1
451,191 + -0.3
451,191 + -0.8
451,231 - -0.4
451,248 - -2.3
451,260 + +0.5
451,268 - +0.4

Or see this region's nucleotide sequence