Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02270

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p02260 and PGA1_262p02270 are separated by 20 nucleotidesPGA1_262p02270 and PGA1_262p02280 are separated by 175 nucleotides PGA1_262p02260: PGA1_262p02260 - putative two-component sensor histidine kinase/response regulator hybrid protein, at 243,128 to 245,407 _262p02260 PGA1_262p02270: PGA1_262p02270 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 245,428 to 246,360 _262p02270 PGA1_262p02280: PGA1_262p02280 - Phosphoenolpyruvate synthase/pyruvate phosphate dikinase, at 246,536 to 250,561 _262p02280 Position (kb) 245 246 247Strain fitness (log2 ratio) -3 -2 -1 0 1at 244.546 kb on - strand, within PGA1_262p02260at 244.734 kb on - strand, within PGA1_262p02260at 244.821 kb on - strand, within PGA1_262p02260at 244.921 kb on - strand, within PGA1_262p02260at 244.933 kb on - strand, within PGA1_262p02260at 244.948 kb on + strand, within PGA1_262p02260at 244.980 kb on + strand, within PGA1_262p02260at 245.091 kb on + strand, within PGA1_262p02260at 245.149 kb on - strand, within PGA1_262p02260at 245.172 kb on - strand, within PGA1_262p02260at 245.387 kb on + strandat 245.412 kb on - strandat 245.419 kb on - strandat 245.419 kb on - strandat 245.448 kb on - strandat 245.485 kb on + strandat 245.591 kb on - strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.730 kb on + strand, within PGA1_262p02270at 245.748 kb on + strand, within PGA1_262p02270at 245.763 kb on + strand, within PGA1_262p02270at 245.766 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.771 kb on - strand, within PGA1_262p02270at 245.827 kb on - strand, within PGA1_262p02270at 245.856 kb on - strand, within PGA1_262p02270at 245.895 kb on - strand, within PGA1_262p02270at 245.908 kb on - strand, within PGA1_262p02270at 245.917 kb on - strand, within PGA1_262p02270at 245.982 kb on - strand, within PGA1_262p02270at 245.985 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 245.996 kb on + strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.004 kb on - strand, within PGA1_262p02270at 246.092 kb on + strand, within PGA1_262p02270at 246.132 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.168 kb on - strand, within PGA1_262p02270at 246.201 kb on - strand, within PGA1_262p02270at 246.231 kb on + strand, within PGA1_262p02270at 246.262 kb on + strand, within PGA1_262p02270at 246.265 kb on + strand, within PGA1_262p02270at 246.273 kb on - strandat 246.273 kb on - strandat 246.278 kb on + strandat 246.321 kb on + strandat 246.321 kb on + strandat 246.327 kb on + strandat 246.332 kb on + strandat 246.339 kb on - strandat 246.340 kb on - strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.367 kb on + strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.375 kb on - strandat 246.399 kb on + strandat 246.567 kb on - strandat 246.578 kb on - strandat 246.598 kb on - strandat 246.636 kb on - strandat 246.647 kb on - strandat 246.680 kb on - strandat 246.768 kb on - strandat 246.775 kb on - strandat 246.802 kb on + strandat 246.869 kb on - strandat 246.869 kb on - strandat 246.886 kb on - strandat 246.922 kb on + strandat 246.922 kb on + strandat 246.930 kb on - strandat 246.985 kb on + strand, within PGA1_262p02280at 247.019 kb on + strand, within PGA1_262p02280at 247.290 kb on + strand, within PGA1_262p02280at 247.318 kb on + strand, within PGA1_262p02280

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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244,546 - PGA1_262p02260 0.62 +0.4
244,734 - PGA1_262p02260 0.70 -0.0
244,821 - PGA1_262p02260 0.74 +0.5
244,921 - PGA1_262p02260 0.79 +0.2
244,933 - PGA1_262p02260 0.79 -1.8
244,948 + PGA1_262p02260 0.80 -0.8
244,980 + PGA1_262p02260 0.81 +0.2
245,091 + PGA1_262p02260 0.86 -1.3
245,149 - PGA1_262p02260 0.89 -0.3
245,172 - PGA1_262p02260 0.90 -1.0
245,387 + -2.2
245,412 - -2.6
245,419 - +0.9
245,419 - -1.3
245,448 - -1.3
245,485 + -0.3
245,591 - PGA1_262p02270 0.17 +0.2
245,730 + PGA1_262p02270 0.32 +0.3
245,730 + PGA1_262p02270 0.32 -0.6
245,748 + PGA1_262p02270 0.34 -1.5
245,763 + PGA1_262p02270 0.36 -0.3
245,766 - PGA1_262p02270 0.36 -0.7
245,771 - PGA1_262p02270 0.37 -0.6
245,771 - PGA1_262p02270 0.37 -0.7
245,827 - PGA1_262p02270 0.43 +1.2
245,856 - PGA1_262p02270 0.46 -1.0
245,895 - PGA1_262p02270 0.50 -0.9
245,908 - PGA1_262p02270 0.51 +0.5
245,917 - PGA1_262p02270 0.52 -2.8
245,982 - PGA1_262p02270 0.59 -1.0
245,985 + PGA1_262p02270 0.60 -1.0
245,996 + PGA1_262p02270 0.61 -0.5
245,996 + PGA1_262p02270 0.61 -0.9
246,004 - PGA1_262p02270 0.62 -1.2
246,004 - PGA1_262p02270 0.62 -0.4
246,004 - PGA1_262p02270 0.62 -0.7
246,092 + PGA1_262p02270 0.71 +0.4
246,132 - PGA1_262p02270 0.75 -0.7
246,168 - PGA1_262p02270 0.79 -0.6
246,168 - PGA1_262p02270 0.79 +0.2
246,168 - PGA1_262p02270 0.79 -1.2
246,201 - PGA1_262p02270 0.83 -0.5
246,231 + PGA1_262p02270 0.86 -2.1
246,262 + PGA1_262p02270 0.89 -0.4
246,265 + PGA1_262p02270 0.90 -1.3
246,273 - -1.0
246,273 - -1.5
246,278 + -0.2
246,321 + +0.9
246,321 + +0.1
246,327 + -0.4
246,332 + -0.5
246,339 - -0.1
246,340 - -0.5
246,367 + -0.9
246,367 + +0.6
246,367 + -0.3
246,375 - -1.2
246,375 - -1.2
246,375 - -0.3
246,375 - -3.2
246,375 - +0.4
246,375 - +0.3
246,375 - +1.0
246,399 + +0.1
246,567 - +0.6
246,578 - -0.3
246,598 - -0.9
246,636 - +1.2
246,647 - -1.4
246,680 - -1.3
246,768 - -0.2
246,775 - -1.5
246,802 + +0.6
246,869 - -0.1
246,869 - +0.6
246,886 - -0.0
246,922 + +0.6
246,922 + -0.4
246,930 - +0.1
246,985 + PGA1_262p02280 0.11 -0.8
247,019 + PGA1_262p02280 0.12 -0.5
247,290 + PGA1_262p02280 0.19 +0.2
247,318 + PGA1_262p02280 0.19 +1.4

Or see this region's nucleotide sequence