Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p02100

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p02080 and PGA1_262p02090 overlap by 4 nucleotidesPGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotidesPGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotidesPGA1_262p02110 and PGA1_262p02120 overlap by 17 nucleotides PGA1_262p02080: PGA1_262p02080 - hypothetical protein, at 226,133 to 226,477 _262p02080 PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860 _262p02090 PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761 _262p02100 PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246 _262p02110 PGA1_262p02120: PGA1_262p02120 - chemotaxis protein CheA, at 228,230 to 230,365 _262p02120 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1at 226.107 kb on - strandat 226.107 kb on - strandat 226.117 kb on - strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.136 kb on + strandat 226.144 kb on - strandat 226.159 kb on + strandat 226.210 kb on - strand, within PGA1_262p02080at 226.283 kb on - strand, within PGA1_262p02080at 226.283 kb on - strand, within PGA1_262p02080at 226.288 kb on - strand, within PGA1_262p02080at 226.294 kb on + strand, within PGA1_262p02080at 226.302 kb on - strand, within PGA1_262p02080at 226.328 kb on + strand, within PGA1_262p02080at 226.400 kb on + strand, within PGA1_262p02080at 226.418 kb on - strand, within PGA1_262p02080at 226.422 kb on + strand, within PGA1_262p02080at 226.522 kb on + strand, within PGA1_262p02090at 226.606 kb on + strand, within PGA1_262p02090at 226.629 kb on + strand, within PGA1_262p02090at 226.665 kb on - strand, within PGA1_262p02090at 226.689 kb on - strand, within PGA1_262p02090at 226.779 kb on + strand, within PGA1_262p02090at 226.787 kb on - strand, within PGA1_262p02090at 226.824 kb on - strandat 226.896 kb on + strandat 226.896 kb on + strandat 226.899 kb on - strandat 226.902 kb on - strandat 226.902 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.904 kb on - strandat 226.949 kb on + strandat 226.976 kb on - strandat 227.014 kb on + strand, within PGA1_262p02100at 227.014 kb on + strand, within PGA1_262p02100at 227.022 kb on - strand, within PGA1_262p02100at 227.124 kb on + strand, within PGA1_262p02100at 227.143 kb on + strandat 227.143 kb on + strand, within PGA1_262p02100at 227.143 kb on + strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.151 kb on - strand, within PGA1_262p02100at 227.181 kb on + strand, within PGA1_262p02100at 227.245 kb on - strand, within PGA1_262p02100at 227.247 kb on + strand, within PGA1_262p02100at 227.339 kb on - strand, within PGA1_262p02100at 227.371 kb on + strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.371 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.372 kb on - strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.397 kb on + strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.405 kb on - strand, within PGA1_262p02100at 227.519 kb on + strand, within PGA1_262p02100at 227.522 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.548 kb on + strand, within PGA1_262p02100at 227.566 kb on - strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.662 kb on + strand, within PGA1_262p02100at 227.716 kb on + strandat 227.716 kb on + strandat 227.724 kb on - strandat 227.886 kb on + strand, within PGA1_262p02110at 227.887 kb on - strand, within PGA1_262p02110at 227.894 kb on - strand, within PGA1_262p02110at 227.956 kb on - strand, within PGA1_262p02110at 228.050 kb on - strand, within PGA1_262p02110at 228.154 kb on + strand, within PGA1_262p02110at 228.385 kb on + strandat 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.504 kb on + strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.512 kb on - strand, within PGA1_262p02120at 228.643 kb on + strand, within PGA1_262p02120at 228.648 kb on + strand, within PGA1_262p02120at 228.656 kb on - strand, within PGA1_262p02120at 228.661 kb on - strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.673 kb on + strand, within PGA1_262p02120at 228.724 kb on - strand, within PGA1_262p02120at 228.728 kb on + strand, within PGA1_262p02120at 228.750 kb on + strand, within PGA1_262p02120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
226,107 - -0.2
226,107 - -1.2
226,117 - -0.3
226,136 + +0.5
226,136 + +1.0
226,136 + +0.4
226,136 + +0.3
226,144 - -0.3
226,159 + -0.4
226,210 - PGA1_262p02080 0.22 -0.7
226,283 - PGA1_262p02080 0.43 +0.7
226,283 - PGA1_262p02080 0.43 -0.9
226,288 - PGA1_262p02080 0.45 -1.6
226,294 + PGA1_262p02080 0.47 -0.2
226,302 - PGA1_262p02080 0.49 +0.9
226,328 + PGA1_262p02080 0.57 -1.0
226,400 + PGA1_262p02080 0.77 +0.5
226,418 - PGA1_262p02080 0.83 -0.1
226,422 + PGA1_262p02080 0.84 -0.1
226,522 + PGA1_262p02090 0.12 -3.2
226,606 + PGA1_262p02090 0.34 -0.8
226,629 + PGA1_262p02090 0.40 +0.9
226,665 - PGA1_262p02090 0.49 +1.1
226,689 - PGA1_262p02090 0.56 -0.5
226,779 + PGA1_262p02090 0.79 -0.0
226,787 - PGA1_262p02090 0.81 -0.6
226,824 - -1.9
226,896 + +0.4
226,896 + +0.2
226,899 - -0.3
226,902 - +1.0
226,902 - +0.5
226,904 - -0.5
226,904 - -0.7
226,904 - -0.0
226,904 - +0.7
226,949 + +1.2
226,976 - -0.5
227,014 + PGA1_262p02100 0.13 -0.2
227,014 + PGA1_262p02100 0.13 +0.2
227,022 - PGA1_262p02100 0.14 -0.9
227,124 + PGA1_262p02100 0.26 -1.8
227,143 + +0.2
227,143 + PGA1_262p02100 0.28 +0.6
227,143 + PGA1_262p02100 0.28 +0.6
227,151 - PGA1_262p02100 0.29 -0.5
227,151 - PGA1_262p02100 0.29 -1.8
227,181 + PGA1_262p02100 0.33 -0.5
227,245 - PGA1_262p02100 0.40 +0.1
227,247 + PGA1_262p02100 0.40 -0.8
227,339 - PGA1_262p02100 0.51 +0.5
227,371 + PGA1_262p02100 0.55 -1.9
227,371 - PGA1_262p02100 0.55 -0.2
227,371 - PGA1_262p02100 0.55 -0.2
227,372 - PGA1_262p02100 0.55 -1.3
227,372 - PGA1_262p02100 0.55 -1.6
227,397 + PGA1_262p02100 0.58 +0.5
227,397 + PGA1_262p02100 0.58 -0.1
227,405 - PGA1_262p02100 0.59 -1.2
227,405 - PGA1_262p02100 0.59 -2.4
227,519 + PGA1_262p02100 0.72 +0.8
227,522 + PGA1_262p02100 0.72 -0.9
227,548 + PGA1_262p02100 0.75 +0.9
227,548 + PGA1_262p02100 0.75 -0.7
227,566 - PGA1_262p02100 0.77 +0.2
227,662 + PGA1_262p02100 0.88 -2.1
227,662 + PGA1_262p02100 0.88 +0.9
227,716 + +0.1
227,716 + -1.4
227,724 - +0.2
227,886 + PGA1_262p02110 0.26 -1.4
227,887 - PGA1_262p02110 0.26 -1.3
227,894 - PGA1_262p02110 0.28 -1.0
227,956 - PGA1_262p02110 0.40 -0.0
228,050 - PGA1_262p02110 0.60 -0.8
228,154 + PGA1_262p02110 0.81 -0.8
228,385 + +0.4
228,504 + PGA1_262p02120 0.13 -0.8
228,504 + PGA1_262p02120 0.13 +0.7
228,504 + PGA1_262p02120 0.13 -0.2
228,504 + PGA1_262p02120 0.13 -0.6
228,504 + PGA1_262p02120 0.13 +0.5
228,504 + PGA1_262p02120 0.13 +0.0
228,504 + PGA1_262p02120 0.13 +0.8
228,504 + PGA1_262p02120 0.13 +0.2
228,504 + PGA1_262p02120 0.13 -0.3
228,504 + PGA1_262p02120 0.13 +0.0
228,512 - PGA1_262p02120 0.13 -1.3
228,512 - PGA1_262p02120 0.13 -1.9
228,512 - PGA1_262p02120 0.13 -0.6
228,512 - PGA1_262p02120 0.13 -0.5
228,512 - PGA1_262p02120 0.13 +0.5
228,512 - PGA1_262p02120 0.13 -2.4
228,512 - PGA1_262p02120 0.13 -1.2
228,512 - PGA1_262p02120 0.13 -0.0
228,643 + PGA1_262p02120 0.19 -1.1
228,648 + PGA1_262p02120 0.20 -1.8
228,656 - PGA1_262p02120 0.20 -0.8
228,661 - PGA1_262p02120 0.20 +0.3
228,673 + PGA1_262p02120 0.21 -1.0
228,673 + PGA1_262p02120 0.21 -2.3
228,724 - PGA1_262p02120 0.23 -0.2
228,728 + PGA1_262p02120 0.23 -1.2
228,750 + PGA1_262p02120 0.24 -0.2

Or see this region's nucleotide sequence