Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02070 and PGA1_262p02080 are separated by 236 nucleotides PGA1_262p02080 and PGA1_262p02090 overlap by 4 nucleotides PGA1_262p02090 and PGA1_262p02100 are separated by 37 nucleotides PGA1_262p02100 and PGA1_262p02110 overlap by 4 nucleotides
PGA1_262p02070: PGA1_262p02070 - hypothetical protein, at 225,618 to 225,896
_262p02070
PGA1_262p02080: PGA1_262p02080 - hypothetical protein, at 226,133 to 226,477
_262p02080
PGA1_262p02090: PGA1_262p02090 - response regulator receiver domain-containing protein, at 226,474 to 226,860
_262p02090
PGA1_262p02100: PGA1_262p02100 - methyltransferase, cheR type, at 226,898 to 227,761
_262p02100
PGA1_262p02110: PGA1_262p02110 - putative chemotaxis protein CheW, at 227,758 to 228,246
_262p02110
Position (kb) 226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 225.580 kb on + strand at 225.582 kb on - strand at 225.585 kb on + strand at 225.611 kb on + strand at 225.612 kb on + strand at 225.764 kb on - strand, within PGA1_262p02070 at 225.765 kb on - strand, within PGA1_262p02070 at 226.107 kb on - strand at 226.107 kb on - strand at 226.117 kb on - strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.136 kb on + strand at 226.144 kb on - strand at 226.159 kb on + strand at 226.210 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.283 kb on - strand, within PGA1_262p02080 at 226.288 kb on - strand, within PGA1_262p02080 at 226.294 kb on + strand, within PGA1_262p02080 at 226.302 kb on - strand, within PGA1_262p02080 at 226.328 kb on + strand, within PGA1_262p02080 at 226.400 kb on + strand, within PGA1_262p02080 at 226.418 kb on - strand, within PGA1_262p02080 at 226.422 kb on + strand, within PGA1_262p02080 at 226.522 kb on + strand, within PGA1_262p02090 at 226.606 kb on + strand, within PGA1_262p02090 at 226.629 kb on + strand, within PGA1_262p02090 at 226.665 kb on - strand, within PGA1_262p02090 at 226.689 kb on - strand, within PGA1_262p02090 at 226.779 kb on + strand, within PGA1_262p02090 at 226.787 kb on - strand, within PGA1_262p02090 at 226.824 kb on - strand at 226.896 kb on + strand at 226.896 kb on + strand at 226.899 kb on - strand at 226.902 kb on - strand at 226.902 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.904 kb on - strand at 226.949 kb on + strand at 226.976 kb on - strand at 227.014 kb on + strand, within PGA1_262p02100 at 227.014 kb on + strand, within PGA1_262p02100 at 227.022 kb on - strand, within PGA1_262p02100 at 227.124 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand at 227.143 kb on + strand, within PGA1_262p02100 at 227.143 kb on + strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.151 kb on - strand, within PGA1_262p02100 at 227.181 kb on + strand, within PGA1_262p02100 at 227.245 kb on - strand, within PGA1_262p02100 at 227.247 kb on + strand, within PGA1_262p02100 at 227.339 kb on - strand, within PGA1_262p02100 at 227.371 kb on + strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.371 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.372 kb on - strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.397 kb on + strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100 at 227.405 kb on - strand, within PGA1_262p02100 at 227.519 kb on + strand, within PGA1_262p02100 at 227.522 kb on + strand, within PGA1_262p02100 at 227.548 kb on + strand, within PGA1_262p02100 at 227.548 kb on + strand, within PGA1_262p02100 at 227.566 kb on - strand, within PGA1_262p02100 at 227.662 kb on + strand, within PGA1_262p02100 at 227.662 kb on + strand, within PGA1_262p02100 at 227.716 kb on + strand at 227.716 kb on + strand at 227.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 225,580 + +0.3 225,582 - -1.0 225,585 + -0.4 225,611 + +0.2 225,612 + -0.2 225,764 - PGA1_262p02070 0.52 +0.0 225,765 - PGA1_262p02070 0.53 +1.4 226,107 - -0.2 226,107 - -1.2 226,117 - -0.3 226,136 + +0.5 226,136 + +1.0 226,136 + +0.4 226,136 + +0.3 226,144 - -0.3 226,159 + -0.4 226,210 - PGA1_262p02080 0.22 -0.7 226,283 - PGA1_262p02080 0.43 +0.7 226,283 - PGA1_262p02080 0.43 -0.9 226,288 - PGA1_262p02080 0.45 -1.6 226,294 + PGA1_262p02080 0.47 -0.2 226,302 - PGA1_262p02080 0.49 +0.9 226,328 + PGA1_262p02080 0.57 -1.0 226,400 + PGA1_262p02080 0.77 +0.5 226,418 - PGA1_262p02080 0.83 -0.1 226,422 + PGA1_262p02080 0.84 -0.1 226,522 + PGA1_262p02090 0.12 -3.2 226,606 + PGA1_262p02090 0.34 -0.8 226,629 + PGA1_262p02090 0.40 +0.9 226,665 - PGA1_262p02090 0.49 +1.1 226,689 - PGA1_262p02090 0.56 -0.5 226,779 + PGA1_262p02090 0.79 -0.0 226,787 - PGA1_262p02090 0.81 -0.6 226,824 - -1.9 226,896 + +0.4 226,896 + +0.2 226,899 - -0.3 226,902 - +1.0 226,902 - +0.5 226,904 - -0.5 226,904 - -0.7 226,904 - -0.0 226,904 - +0.7 226,949 + +1.2 226,976 - -0.5 227,014 + PGA1_262p02100 0.13 -0.2 227,014 + PGA1_262p02100 0.13 +0.2 227,022 - PGA1_262p02100 0.14 -0.9 227,124 + PGA1_262p02100 0.26 -1.8 227,143 + +0.2 227,143 + PGA1_262p02100 0.28 +0.6 227,143 + PGA1_262p02100 0.28 +0.6 227,151 - PGA1_262p02100 0.29 -0.5 227,151 - PGA1_262p02100 0.29 -1.8 227,181 + PGA1_262p02100 0.33 -0.5 227,245 - PGA1_262p02100 0.40 +0.1 227,247 + PGA1_262p02100 0.40 -0.8 227,339 - PGA1_262p02100 0.51 +0.5 227,371 + PGA1_262p02100 0.55 -1.9 227,371 - PGA1_262p02100 0.55 -0.2 227,371 - PGA1_262p02100 0.55 -0.2 227,372 - PGA1_262p02100 0.55 -1.3 227,372 - PGA1_262p02100 0.55 -1.6 227,397 + PGA1_262p02100 0.58 +0.5 227,397 + PGA1_262p02100 0.58 -0.1 227,405 - PGA1_262p02100 0.59 -1.2 227,405 - PGA1_262p02100 0.59 -2.4 227,519 + PGA1_262p02100 0.72 +0.8 227,522 + PGA1_262p02100 0.72 -0.9 227,548 + PGA1_262p02100 0.75 +0.9 227,548 + PGA1_262p02100 0.75 -0.7 227,566 - PGA1_262p02100 0.77 +0.2 227,662 + PGA1_262p02100 0.88 -2.1 227,662 + PGA1_262p02100 0.88 +0.9 227,716 + +0.1 227,716 + -1.4 227,724 - +0.2
Or see this region's nucleotide sequence