Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3259 and HP15_3260 are separated by 2 nucleotides HP15_3260 and HP15_3261 are separated by 226 nucleotides HP15_3261 and HP15_3262 overlap by 1 nucleotides
HP15_3259: HP15_3259 - NolW domain protein, at 3,412,919 to 3,413,707
_3259
HP15_3260: HP15_3260 - heat shock protein DnaJ domain protein, at 3,413,710 to 3,414,216
_3260
HP15_3261: HP15_3261 - efflux transporter, RND family, MFP subunit, at 3,414,443 to 3,415,543
_3261
HP15_3262: HP15_3262 - multidrug resistance protein, at 3,415,543 to 3,418,632
_3262
Position (kb)
3414
3415
3416 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3413.586 kb on + strand, within HP15_3259 at 3413.616 kb on + strand, within HP15_3259 at 3413.676 kb on + strand at 3413.691 kb on + strand at 3414.087 kb on + strand, within HP15_3260 at 3414.276 kb on - strand at 3414.501 kb on - strand at 3414.731 kb on + strand, within HP15_3261 at 3414.731 kb on + strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.739 kb on - strand, within HP15_3261 at 3414.822 kb on + strand, within HP15_3261 at 3414.950 kb on + strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.061 kb on - strand, within HP15_3261 at 3415.133 kb on - strand, within HP15_3261 at 3415.136 kb on + strand, within HP15_3261 at 3415.163 kb on - strand, within HP15_3261 at 3415.183 kb on + strand, within HP15_3261 at 3415.184 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.201 kb on - strand, within HP15_3261 at 3415.203 kb on + strand, within HP15_3261 at 3415.221 kb on - strand, within HP15_3261 at 3415.303 kb on - strand, within HP15_3261 at 3415.559 kb on + strand at 3415.660 kb on - strand at 3415.706 kb on + strand at 3415.706 kb on + strand at 3415.714 kb on - strand at 3415.850 kb on - strand at 3415.850 kb on - strand at 3415.910 kb on + strand, within HP15_3262 at 3415.951 kb on + strand, within HP15_3262 at 3416.018 kb on + strand, within HP15_3262 at 3416.023 kb on + strand, within HP15_3262 at 3416.028 kb on + strand, within HP15_3262 at 3416.182 kb on + strand, within HP15_3262 at 3416.201 kb on - strand, within HP15_3262 at 3416.280 kb on + strand, within HP15_3262 at 3416.288 kb on - strand, within HP15_3262 at 3416.290 kb on + strand, within HP15_3262 at 3416.290 kb on + strand, within HP15_3262 at 3416.328 kb on - strand, within HP15_3262 at 3416.364 kb on - strand, within HP15_3262 at 3416.433 kb on + strand, within HP15_3262
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,413,586 + HP15_3259 0.85 +0.1 3,413,616 + HP15_3259 0.88 -1.9 3,413,676 + +0.2 3,413,691 + +0.5 3,414,087 + HP15_3260 0.74 +0.2 3,414,276 - -3.8 3,414,501 - -0.7 3,414,731 + HP15_3261 0.26 +1.3 3,414,731 + HP15_3261 0.26 +0.1 3,414,739 - HP15_3261 0.27 +0.8 3,414,739 - HP15_3261 0.27 +0.7 3,414,822 + HP15_3261 0.34 +0.2 3,414,950 + HP15_3261 0.46 +1.1 3,415,061 - HP15_3261 0.56 +0.6 3,415,061 - HP15_3261 0.56 +2.6 3,415,133 - HP15_3261 0.63 +0.2 3,415,136 + HP15_3261 0.63 +0.0 3,415,163 - HP15_3261 0.65 +0.7 3,415,183 + HP15_3261 0.67 +0.2 3,415,184 - HP15_3261 0.67 +1.5 3,415,201 - HP15_3261 0.69 +1.1 3,415,201 - HP15_3261 0.69 +1.4 3,415,201 - HP15_3261 0.69 +0.5 3,415,203 + HP15_3261 0.69 +0.8 3,415,221 - HP15_3261 0.71 +0.6 3,415,303 - HP15_3261 0.78 +1.1 3,415,559 + +1.0 3,415,660 - +0.7 3,415,706 + +1.3 3,415,706 + +0.4 3,415,714 - +1.0 3,415,850 - +0.8 3,415,850 - +0.4 3,415,910 + HP15_3262 0.12 +0.5 3,415,951 + HP15_3262 0.13 +1.0 3,416,018 + HP15_3262 0.15 +1.4 3,416,023 + HP15_3262 0.16 +0.5 3,416,028 + HP15_3262 0.16 +0.6 3,416,182 + HP15_3262 0.21 +0.5 3,416,201 - HP15_3262 0.21 +0.7 3,416,280 + HP15_3262 0.24 +2.1 3,416,288 - HP15_3262 0.24 +1.3 3,416,290 + HP15_3262 0.24 +1.3 3,416,290 + HP15_3262 0.24 +1.0 3,416,328 - HP15_3262 0.25 +0.6 3,416,364 - HP15_3262 0.27 +1.0 3,416,433 + HP15_3262 0.29 -0.1
Or see this region's nucleotide sequence