Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3074 and HP15_3075 are separated by 395 nucleotides HP15_3075 and HP15_3076 are separated by 75 nucleotides HP15_3076 and HP15_3077 are separated by 22 nucleotides
HP15_3074: HP15_3074 - membrane protein containing peptidase M41, FtsH / ATPase, AAA-type, core, at 3,227,088 to 3,229,022
_3074
HP15_3075: HP15_3075 - RNA-binding, CRM domain, prokaryote, at 3,229,418 to 3,229,729
_3075
HP15_3076: HP15_3076 - protein containing prokaryotic transcription elongation factor GreA domain, at 3,229,805 to 3,230,266
_3076
HP15_3077: HP15_3077 - carbamoyl-phosphate synthase, large subunit, at 3,230,289 to 3,233,507
_3077
Position (kb)
3229
3230 Strain fitness (log2 ratio)
-1
0
1
2 at 3229.137 kb on + strand at 3229.172 kb on + strand at 3229.236 kb on - strand at 3229.245 kb on + strand at 3229.245 kb on + strand at 3229.254 kb on - strand at 3229.263 kb on - strand at 3229.639 kb on + strand, within HP15_3075 at 3229.647 kb on - strand, within HP15_3075 at 3229.811 kb on + strand at 3229.822 kb on + strand at 3230.107 kb on + strand, within HP15_3076 at 3230.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,229,137 + -1.1 3,229,172 + +0.3 3,229,236 - +0.2 3,229,245 + +0.8 3,229,245 + -0.7 3,229,254 - -0.3 3,229,263 - -0.2 3,229,639 + HP15_3075 0.71 -0.7 3,229,647 - HP15_3075 0.73 +1.8 3,229,811 + +1.8 3,229,822 + -0.6 3,230,107 + HP15_3076 0.65 -0.2 3,230,288 - +0.3
Or see this region's nucleotide sequence