Strain Fitness in Marinobacter adhaerens HP15 around HP15_3075

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3074 and HP15_3075 are separated by 395 nucleotidesHP15_3075 and HP15_3076 are separated by 75 nucleotidesHP15_3076 and HP15_3077 are separated by 22 nucleotides HP15_3074: HP15_3074 - membrane protein containing peptidase M41, FtsH / ATPase, AAA-type, core, at 3,227,088 to 3,229,022 _3074 HP15_3075: HP15_3075 - RNA-binding, CRM domain, prokaryote, at 3,229,418 to 3,229,729 _3075 HP15_3076: HP15_3076 - protein containing prokaryotic transcription elongation factor GreA domain, at 3,229,805 to 3,230,266 _3076 HP15_3077: HP15_3077 - carbamoyl-phosphate synthase, large subunit, at 3,230,289 to 3,233,507 _3077 Position (kb) 3229 3230Strain fitness (log2 ratio) -1 0 1 2at 3229.137 kb on + strandat 3229.172 kb on + strandat 3229.236 kb on - strandat 3229.245 kb on + strandat 3229.245 kb on + strandat 3229.254 kb on - strandat 3229.263 kb on - strandat 3229.639 kb on + strand, within HP15_3075at 3229.647 kb on - strand, within HP15_3075at 3229.811 kb on + strandat 3229.822 kb on + strandat 3230.107 kb on + strand, within HP15_3076at 3230.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,229,137 + -1.1
3,229,172 + +0.3
3,229,236 - +0.2
3,229,245 + +0.8
3,229,245 + -0.7
3,229,254 - -0.3
3,229,263 - -0.2
3,229,639 + HP15_3075 0.71 -0.7
3,229,647 - HP15_3075 0.73 +1.8
3,229,811 + +1.8
3,229,822 + -0.6
3,230,107 + HP15_3076 0.65 -0.2
3,230,288 - +0.3

Or see this region's nucleotide sequence