Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03030

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03020 and PGA1_c03030 are separated by 5 nucleotidesPGA1_c03030 and PGA1_c03040 overlap by 4 nucleotidesPGA1_c03040 and PGA1_c03050 are separated by 1 nucleotidesPGA1_c03050 and PGA1_c03060 are separated by 3 nucleotides PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322 _c03020 PGA1_c03030: PGA1_c03030 - hypothetical protein, at 291,328 to 291,861 _c03030 PGA1_c03040: PGA1_c03040 - hypothetical protein, at 291,858 to 292,241 _c03040 PGA1_c03050: PGA1_c03050 - hypothetical protein, at 292,243 to 292,800 _c03050 PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799 _c03060 Position (kb) 291 292Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 290.336 kb on + strand, within PGA1_c03020at 290.379 kb on - strand, within PGA1_c03020at 290.409 kb on + strand, within PGA1_c03020at 290.417 kb on - strand, within PGA1_c03020at 290.417 kb on - strand, within PGA1_c03020at 290.437 kb on - strand, within PGA1_c03020at 290.452 kb on + strand, within PGA1_c03020at 290.467 kb on + strand, within PGA1_c03020at 290.486 kb on + strand, within PGA1_c03020at 290.572 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.591 kb on - strand, within PGA1_c03020at 290.734 kb on + strand, within PGA1_c03020at 290.908 kb on - strand, within PGA1_c03020at 290.924 kb on - strand, within PGA1_c03020at 291.003 kb on + strand, within PGA1_c03020at 291.013 kb on - strand, within PGA1_c03020at 291.013 kb on - strand, within PGA1_c03020at 291.093 kb on + strand, within PGA1_c03020at 291.093 kb on + strand, within PGA1_c03020at 291.094 kb on + strand, within PGA1_c03020at 291.100 kb on + strand, within PGA1_c03020at 291.118 kb on - strand, within PGA1_c03020at 291.157 kb on + strand, within PGA1_c03020at 291.165 kb on - strand, within PGA1_c03020at 291.228 kb on + strandat 291.236 kb on - strandat 291.248 kb on + strandat 291.256 kb on - strandat 291.313 kb on - strandat 291.313 kb on - strandat 291.317 kb on + strandat 291.344 kb on + strandat 291.349 kb on + strandat 291.349 kb on + strandat 291.349 kb on + strandat 291.349 kb on + strandat 291.349 kb on + strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.357 kb on - strandat 291.370 kb on + strandat 291.374 kb on - strandat 291.425 kb on + strand, within PGA1_c03030at 291.433 kb on - strand, within PGA1_c03030at 291.487 kb on - strand, within PGA1_c03030at 291.487 kb on - strand, within PGA1_c03030at 291.511 kb on - strand, within PGA1_c03030at 291.515 kb on + strand, within PGA1_c03030at 291.523 kb on - strand, within PGA1_c03030at 291.528 kb on + strand, within PGA1_c03030at 291.576 kb on + strand, within PGA1_c03030at 291.616 kb on + strand, within PGA1_c03030at 291.616 kb on + strand, within PGA1_c03030at 291.624 kb on - strand, within PGA1_c03030at 291.650 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.710 kb on + strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.718 kb on - strand, within PGA1_c03030at 291.720 kb on + strand, within PGA1_c03030at 291.728 kb on - strand, within PGA1_c03030at 291.728 kb on - strand, within PGA1_c03030at 291.731 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.752 kb on + strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.760 kb on - strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.762 kb on + strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.770 kb on - strand, within PGA1_c03030at 291.772 kb on + strand, within PGA1_c03030at 291.772 kb on + strand, within PGA1_c03030at 291.780 kb on - strand, within PGA1_c03030at 291.780 kb on - strand, within PGA1_c03030at 291.784 kb on + strand, within PGA1_c03030at 291.806 kb on - strand, within PGA1_c03030at 291.825 kb on + strandat 291.851 kb on + strandat 291.851 kb on + strandat 291.851 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.856 kb on + strandat 291.859 kb on - strandat 291.859 kb on - strandat 291.863 kb on + strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.864 kb on - strandat 291.893 kb on + strandat 291.898 kb on + strand, within PGA1_c03040at 291.898 kb on + strand, within PGA1_c03040at 291.906 kb on - strand, within PGA1_c03040at 291.918 kb on - strand, within PGA1_c03040at 291.924 kb on + strand, within PGA1_c03040at 291.932 kb on + strand, within PGA1_c03040at 291.940 kb on - strand, within PGA1_c03040at 291.963 kb on - strand, within PGA1_c03040at 291.968 kb on - strand, within PGA1_c03040at 292.007 kb on - strand, within PGA1_c03040at 292.063 kb on + strand, within PGA1_c03040at 292.093 kb on - strand, within PGA1_c03040at 292.093 kb on - strand, within PGA1_c03040at 292.117 kb on + strand, within PGA1_c03040at 292.117 kb on + strand, within PGA1_c03040at 292.183 kb on + strand, within PGA1_c03040at 292.214 kb on + strandat 292.239 kb on - strandat 292.273 kb on + strandat 292.276 kb on - strandat 292.276 kb on - strandat 292.330 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.335 kb on + strand, within PGA1_c03050at 292.338 kb on - strand, within PGA1_c03050at 292.343 kb on - strand, within PGA1_c03050at 292.365 kb on - strand, within PGA1_c03050at 292.408 kb on + strand, within PGA1_c03050at 292.416 kb on - strand, within PGA1_c03050at 292.425 kb on + strand, within PGA1_c03050at 292.426 kb on - strand, within PGA1_c03050at 292.552 kb on + strand, within PGA1_c03050at 292.602 kb on + strand, within PGA1_c03050at 292.610 kb on - strand, within PGA1_c03050at 292.653 kb on - strand, within PGA1_c03050at 292.763 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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290,336 + PGA1_c03020 0.25 -0.4
290,379 - PGA1_c03020 0.28 +1.6
290,409 + PGA1_c03020 0.30 -1.4
290,417 - PGA1_c03020 0.31 -0.0
290,417 - PGA1_c03020 0.31 -0.8
290,437 - PGA1_c03020 0.32 -2.2
290,452 + PGA1_c03020 0.34 -1.8
290,467 + PGA1_c03020 0.35 -2.9
290,486 + PGA1_c03020 0.36 -1.2
290,572 + PGA1_c03020 0.43 -0.3
290,583 + PGA1_c03020 0.44 +0.4
290,583 + PGA1_c03020 0.44 -0.6
290,583 + PGA1_c03020 0.44 +0.6
290,591 - PGA1_c03020 0.44 -0.1
290,734 + PGA1_c03020 0.55 +0.6
290,908 - PGA1_c03020 0.68 +0.6
290,924 - PGA1_c03020 0.70 -0.4
291,003 + PGA1_c03020 0.76 +1.3
291,013 - PGA1_c03020 0.76 +0.8
291,013 - PGA1_c03020 0.76 +0.1
291,093 + PGA1_c03020 0.82 -0.4
291,093 + PGA1_c03020 0.82 -1.4
291,094 + PGA1_c03020 0.83 -0.4
291,100 + PGA1_c03020 0.83 -0.2
291,118 - PGA1_c03020 0.84 -0.8
291,157 + PGA1_c03020 0.87 -0.2
291,165 - PGA1_c03020 0.88 -0.3
291,228 + -1.0
291,236 - +0.8
291,248 + -0.8
291,256 - -1.0
291,313 - -0.2
291,313 - -1.4
291,317 + -0.5
291,344 + -0.9
291,349 + +0.6
291,349 + -0.8
291,349 + -0.1
291,349 + -3.1
291,349 + +0.2
291,357 - -0.7
291,357 - +0.8
291,357 - +0.1
291,357 - +0.1
291,357 - -0.5
291,357 - -0.0
291,357 - -0.8
291,357 - +0.1
291,357 - -1.1
291,357 - -2.8
291,370 + -0.2
291,374 - +0.4
291,425 + PGA1_c03030 0.18 -0.4
291,433 - PGA1_c03030 0.20 +1.0
291,487 - PGA1_c03030 0.30 +0.8
291,487 - PGA1_c03030 0.30 -0.8
291,511 - PGA1_c03030 0.34 -0.5
291,515 + PGA1_c03030 0.35 -1.4
291,523 - PGA1_c03030 0.37 -1.8
291,528 + PGA1_c03030 0.37 +0.2
291,576 + PGA1_c03030 0.46 +1.4
291,616 + PGA1_c03030 0.54 -2.9
291,616 + PGA1_c03030 0.54 -2.5
291,624 - PGA1_c03030 0.55 -0.3
291,650 + PGA1_c03030 0.60 -0.0
291,710 + PGA1_c03030 0.72 -0.4
291,710 + PGA1_c03030 0.72 +0.0
291,710 + PGA1_c03030 0.72 -0.4
291,710 + PGA1_c03030 0.72 -1.6
291,710 + PGA1_c03030 0.72 -1.7
291,710 + PGA1_c03030 0.72 +0.6
291,710 + PGA1_c03030 0.72 -1.4
291,710 + PGA1_c03030 0.72 +0.9
291,710 + PGA1_c03030 0.72 +0.7
291,710 + PGA1_c03030 0.72 -0.0
291,710 + PGA1_c03030 0.72 -0.9
291,718 - PGA1_c03030 0.73 +0.6
291,718 - PGA1_c03030 0.73 -1.1
291,718 - PGA1_c03030 0.73 +0.8
291,718 - PGA1_c03030 0.73 -0.9
291,718 - PGA1_c03030 0.73 -0.1
291,718 - PGA1_c03030 0.73 -0.4
291,720 + PGA1_c03030 0.73 -0.0
291,728 - PGA1_c03030 0.75 +0.5
291,728 - PGA1_c03030 0.75 +0.3
291,731 + PGA1_c03030 0.75 -0.1
291,752 + PGA1_c03030 0.79 -0.2
291,752 + PGA1_c03030 0.79 -2.1
291,752 + PGA1_c03030 0.79 -1.6
291,752 + PGA1_c03030 0.79 -0.7
291,752 + PGA1_c03030 0.79 +0.7
291,752 + PGA1_c03030 0.79 -1.4
291,760 - PGA1_c03030 0.81 +1.1
291,760 - PGA1_c03030 0.81 +0.9
291,760 - PGA1_c03030 0.81 -0.4
291,760 - PGA1_c03030 0.81 -1.5
291,760 - PGA1_c03030 0.81 -1.4
291,760 - PGA1_c03030 0.81 +0.4
291,760 - PGA1_c03030 0.81 -0.4
291,760 - PGA1_c03030 0.81 +0.6
291,760 - PGA1_c03030 0.81 -0.0
291,760 - PGA1_c03030 0.81 -0.0
291,760 - PGA1_c03030 0.81 -1.2
291,760 - PGA1_c03030 0.81 -1.0
291,760 - PGA1_c03030 0.81 -0.9
291,760 - PGA1_c03030 0.81 -0.9
291,762 + PGA1_c03030 0.81 +0.2
291,762 + PGA1_c03030 0.81 +0.2
291,762 + PGA1_c03030 0.81 -1.1
291,762 + PGA1_c03030 0.81 -1.2
291,762 + PGA1_c03030 0.81 -0.4
291,762 + PGA1_c03030 0.81 -2.9
291,762 + PGA1_c03030 0.81 -0.1
291,762 + PGA1_c03030 0.81 +1.1
291,770 - PGA1_c03030 0.83 -0.0
291,770 - PGA1_c03030 0.83 -0.3
291,770 - PGA1_c03030 0.83 -0.9
291,770 - PGA1_c03030 0.83 -1.1
291,770 - PGA1_c03030 0.83 -1.4
291,770 - PGA1_c03030 0.83 -1.2
291,772 + PGA1_c03030 0.83 +0.4
291,772 + PGA1_c03030 0.83 -0.0
291,780 - PGA1_c03030 0.85 +1.6
291,780 - PGA1_c03030 0.85 -0.4
291,784 + PGA1_c03030 0.85 -1.8
291,806 - PGA1_c03030 0.90 -0.8
291,825 + -1.4
291,851 + +0.7
291,851 + +1.3
291,851 + +1.0
291,856 + -1.2
291,856 + +0.1
291,856 + -0.9
291,856 + +0.6
291,856 + +0.2
291,856 + -0.2
291,859 - -0.1
291,859 - +0.3
291,863 + +0.1
291,864 - +0.6
291,864 - +0.1
291,864 - -0.4
291,864 - -2.0
291,864 - -4.2
291,864 - +0.5
291,864 - +0.7
291,864 - +0.4
291,864 - -0.4
291,864 - -0.3
291,893 + -0.7
291,898 + PGA1_c03040 0.10 -1.6
291,898 + PGA1_c03040 0.10 -1.2
291,906 - PGA1_c03040 0.12 -0.0
291,918 - PGA1_c03040 0.16 -1.6
291,924 + PGA1_c03040 0.17 -1.6
291,932 + PGA1_c03040 0.19 -0.8
291,940 - PGA1_c03040 0.21 +1.0
291,963 - PGA1_c03040 0.27 +0.3
291,968 - PGA1_c03040 0.29 -0.7
292,007 - PGA1_c03040 0.39 +0.3
292,063 + PGA1_c03040 0.53 -3.3
292,093 - PGA1_c03040 0.61 +0.9
292,093 - PGA1_c03040 0.61 +0.6
292,117 + PGA1_c03040 0.67 -0.4
292,117 + PGA1_c03040 0.67 -3.0
292,183 + PGA1_c03040 0.85 -0.0
292,214 + +0.4
292,239 - +0.6
292,273 + -0.0
292,276 - +1.2
292,276 - +1.3
292,330 + PGA1_c03050 0.16 -0.9
292,335 + PGA1_c03050 0.16 -0.4
292,335 + PGA1_c03050 0.16 -0.1
292,335 + PGA1_c03050 0.16 +0.3
292,338 - PGA1_c03050 0.17 +0.1
292,343 - PGA1_c03050 0.18 -0.9
292,365 - PGA1_c03050 0.22 -1.4
292,408 + PGA1_c03050 0.30 -0.2
292,416 - PGA1_c03050 0.31 +0.6
292,425 + PGA1_c03050 0.33 +1.6
292,426 - PGA1_c03050 0.33 +0.5
292,552 + PGA1_c03050 0.55 -2.6
292,602 + PGA1_c03050 0.64 +0.7
292,610 - PGA1_c03050 0.66 -1.8
292,653 - PGA1_c03050 0.73 -0.1
292,763 - -1.2

Or see this region's nucleotide sequence