Strain Fitness in Marinobacter adhaerens HP15 around HP15_256

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_254 and HP15_255 are separated by 260 nucleotidesHP15_255 and HP15_256 are separated by 7 nucleotidesHP15_256 and HP15_257 are separated by 6 nucleotidesHP15_257 and HP15_258 are separated by 83 nucleotides HP15_254: HP15_254 - conserved hypothetical protein, at 244,162 to 244,485 _254 HP15_255: HP15_255 - conserved hypothetical protein, at 244,746 to 245,351 _255 HP15_256: HP15_256 - serine protease, at 245,359 to 247,575 _256 HP15_257: HP15_257 - transcriptional regulator, GntR family, at 247,582 to 248,259 _257 HP15_258: HP15_258 - phospholipase D/Transphosphatidylase, at 248,343 to 249,773 _258 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 244.366 kb on + strand, within HP15_254at 244.403 kb on + strand, within HP15_254at 244.715 kb on - strandat 244.779 kb on + strandat 244.823 kb on + strand, within HP15_255at 244.823 kb on + strand, within HP15_255at 244.831 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255at 245.030 kb on - strand, within HP15_255at 245.162 kb on - strand, within HP15_255at 245.176 kb on + strand, within HP15_255at 245.184 kb on - strand, within HP15_255at 245.224 kb on + strand, within HP15_255at 245.232 kb on - strand, within HP15_255at 245.233 kb on + strand, within HP15_255at 245.247 kb on - strand, within HP15_255at 245.313 kb on - strandat 245.367 kb on + strandat 245.398 kb on - strandat 245.398 kb on - strandat 245.433 kb on + strandat 245.448 kb on - strandat 245.459 kb on - strandat 245.459 kb on - strandat 245.470 kb on - strandat 245.490 kb on + strandat 245.600 kb on - strand, within HP15_256at 245.825 kb on - strand, within HP15_256at 245.833 kb on + strand, within HP15_256at 245.923 kb on - strand, within HP15_256at 246.207 kb on - strand, within HP15_256at 246.223 kb on + strand, within HP15_256at 246.230 kb on - strand, within HP15_256at 246.231 kb on - strand, within HP15_256at 246.306 kb on - strand, within HP15_256at 246.338 kb on - strand, within HP15_256at 246.602 kb on - strand, within HP15_256at 246.733 kb on - strand, within HP15_256at 246.830 kb on + strand, within HP15_256at 246.838 kb on - strand, within HP15_256at 246.848 kb on - strand, within HP15_256at 246.954 kb on + strand, within HP15_256at 246.999 kb on + strand, within HP15_256at 247.047 kb on - strand, within HP15_256at 247.057 kb on - strand, within HP15_256at 247.061 kb on - strand, within HP15_256at 247.127 kb on - strand, within HP15_256at 247.184 kb on + strand, within HP15_256at 247.184 kb on + strand, within HP15_256at 247.303 kb on + strand, within HP15_256at 247.365 kb on + strandat 247.365 kb on + strandat 247.370 kb on + strandat 247.410 kb on - strandat 247.412 kb on + strandat 247.420 kb on - strandat 247.426 kb on + strandat 247.566 kb on + strandat 247.574 kb on - strandat 247.770 kb on - strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.787 kb on + strand, within HP15_257at 247.795 kb on - strand, within HP15_257at 247.795 kb on - strand, within HP15_257at 247.829 kb on + strand, within HP15_257at 247.842 kb on - strand, within HP15_257at 247.844 kb on + strand, within HP15_257at 247.844 kb on + strand, within HP15_257at 247.852 kb on - strand, within HP15_257at 247.862 kb on - strand, within HP15_257at 248.003 kb on + strand, within HP15_257at 248.054 kb on + strand, within HP15_257at 248.131 kb on - strand, within HP15_257at 248.164 kb on - strand, within HP15_257at 248.232 kb on + strandat 248.301 kb on - strandat 248.341 kb on + strandat 248.341 kb on + strandat 248.396 kb on - strandat 248.434 kb on + strandat 248.491 kb on - strand, within HP15_258at 248.501 kb on - strand, within HP15_258at 248.501 kb on - strand, within HP15_258at 248.548 kb on + strand, within HP15_258

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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244,366 + HP15_254 0.63 +1.2
244,403 + HP15_254 0.74 -1.5
244,715 - +1.8
244,779 + +0.5
244,823 + HP15_255 0.13 +1.1
244,823 + HP15_255 0.13 +0.2
244,831 - HP15_255 0.14 +0.4
245,030 - HP15_255 0.47 -0.0
245,030 - HP15_255 0.47 +1.0
245,162 - HP15_255 0.69 +2.7
245,176 + HP15_255 0.71 +2.3
245,184 - HP15_255 0.72 -0.2
245,224 + HP15_255 0.79 -1.4
245,232 - HP15_255 0.80 -0.0
245,233 + HP15_255 0.80 -0.6
245,247 - HP15_255 0.83 +0.9
245,313 - +0.5
245,367 + -0.8
245,398 - +1.8
245,398 - +2.3
245,433 + +1.4
245,448 - +0.5
245,459 - -0.1
245,459 - +4.4
245,470 - +1.2
245,490 + -0.2
245,600 - HP15_256 0.11 +0.2
245,825 - HP15_256 0.21 -2.1
245,833 + HP15_256 0.21 +0.2
245,923 - HP15_256 0.25 +1.4
246,207 - HP15_256 0.38 +1.8
246,223 + HP15_256 0.39 -0.6
246,230 - HP15_256 0.39 +1.2
246,231 - HP15_256 0.39 +1.3
246,306 - HP15_256 0.43 +0.6
246,338 - HP15_256 0.44 -0.2
246,602 - HP15_256 0.56 +1.1
246,733 - HP15_256 0.62 +2.5
246,830 + HP15_256 0.66 +0.9
246,838 - HP15_256 0.67 +1.2
246,848 - HP15_256 0.67 +1.6
246,954 + HP15_256 0.72 +1.5
246,999 + HP15_256 0.74 +0.3
247,047 - HP15_256 0.76 +0.8
247,057 - HP15_256 0.77 -0.5
247,061 - HP15_256 0.77 -0.0
247,127 - HP15_256 0.80 +1.7
247,184 + HP15_256 0.82 -0.1
247,184 + HP15_256 0.82 +0.2
247,303 + HP15_256 0.88 -0.1
247,365 + +0.2
247,365 + -0.0
247,370 + +0.7
247,410 - +0.6
247,412 + +1.1
247,420 - +1.2
247,426 + +0.2
247,566 + +0.0
247,574 - +0.8
247,770 - HP15_257 0.28 +1.1
247,787 + HP15_257 0.30 +0.5
247,787 + HP15_257 0.30 +0.1
247,787 + HP15_257 0.30 -0.8
247,795 - HP15_257 0.31 +1.2
247,795 - HP15_257 0.31 -0.4
247,829 + HP15_257 0.36 +0.8
247,842 - HP15_257 0.38 +1.2
247,844 + HP15_257 0.39 +0.2
247,844 + HP15_257 0.39 +1.2
247,852 - HP15_257 0.40 +1.0
247,862 - HP15_257 0.41 +2.8
248,003 + HP15_257 0.62 -0.0
248,054 + HP15_257 0.70 -0.1
248,131 - HP15_257 0.81 +0.4
248,164 - HP15_257 0.86 +1.8
248,232 + -0.2
248,301 - -1.5
248,341 + +0.2
248,341 + -0.3
248,396 - -1.4
248,434 + +3.9
248,491 - HP15_258 0.10 +0.2
248,501 - HP15_258 0.11 +1.8
248,501 - HP15_258 0.11 +2.1
248,548 + HP15_258 0.14 -0.3

Or see this region's nucleotide sequence