Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24370

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,542,644	+		PGA1_c24350	0.87	-2.3
2,542,665	-		PGA1_c24350	0.88	-0.4
2,542,682	+		PGA1_c24350	0.89	+0.3
2,542,754	-				+0.1
2,542,841	-				-0.7
2,542,859	-				-0.3
2,542,907	-				-1.8
2,542,936	-				-0.2
2,543,002	-				-1.3
2,543,014	-				+0.4
2,543,025	+				-0.2
2,543,062	+				+0.6
2,543,062	+				-0.5
2,543,070	-				-0.4
2,543,070	-				-0.6
2,543,102	+		PGA1_c24360	0.17	-0.2
2,543,102	+		PGA1_c24360	0.17	+0.1
2,543,131	+		PGA1_c24360	0.24	+0.3
2,543,171	-		PGA1_c24360	0.34	-0.8
2,543,178	+		PGA1_c24360	0.36	+0.7
2,543,186	-		PGA1_c24360	0.38	+1.5
2,543,186	-		PGA1_c24360	0.38	-0.7
2,543,207	+		PGA1_c24360	0.44	+0.8
2,543,207	+		PGA1_c24360	0.44	-0.2
2,543,215	-		PGA1_c24360	0.46	-2.0
2,543,270	+		PGA1_c24360	0.60	-0.5
2,543,349	-		PGA1_c24360	0.80	+0.2
2,543,387	-		PGA1_c24360	0.89	+0.7
2,543,393	+				+0.6
2,543,490	-				+0.9
2,543,501	-				-0.0
2,543,505	+				-0.1
2,543,513	-				+0.6
2,543,513	-				+1.1
2,543,591	-				-1.0
2,543,630	-				-0.5
2,543,776	+		PGA1_c24370	0.12	-0.0
2,543,777	+		PGA1_c24370	0.12	+0.4
2,543,784	-		PGA1_c24370	0.13	+0.0
2,543,785	-		PGA1_c24370	0.13	+1.1
2,543,837	-		PGA1_c24370	0.16	-0.5
2,543,858	-		PGA1_c24370	0.18	-1.7
2,543,917	-		PGA1_c24370	0.22	-0.8
2,543,959	-		PGA1_c24370	0.25	-1.3
2,544,039	+		PGA1_c24370	0.31	+0.8
2,544,258	+		PGA1_c24370	0.46	+0.7
2,544,322	-		PGA1_c24370	0.51	-2.3
2,544,332	+		PGA1_c24370	0.51	+0.0
2,544,339	+		PGA1_c24370	0.52	-0.1
2,544,347	-		PGA1_c24370	0.52	+1.1
2,544,368	+		PGA1_c24370	0.54	-0.4
2,544,402	-		PGA1_c24370	0.56	-0.4
2,544,458	-		PGA1_c24370	0.60	-0.9
2,544,508	-		PGA1_c24370	0.64	-2.5
2,544,532	+		PGA1_c24370	0.65	-0.7
2,544,573	+		PGA1_c24370	0.68	+0.2
2,544,685	-		PGA1_c24370	0.76	-0.1
2,544,711	-		PGA1_c24370	0.78	-1.5
2,544,734	-		PGA1_c24370	0.80	-0.5
2,544,758	-		PGA1_c24370	0.81	-1.3
2,544,774	+		PGA1_c24370	0.82	-0.4
2,544,834	+		PGA1_c24370	0.87	-1.2
2,544,915	-				+0.5
2,544,969	+				+3.1
2,544,993	+				+0.3
2,544,993	+				-0.4
2,545,009	+				-0.3
2,545,014	+				+1.2
2,545,017	-				+0.2
2,545,019	+				-1.7
2,545,020	+				-0.1
2,545,022	-				+1.0
2,545,028	-				-0.5
2,545,035	+				-0.9
2,545,035	+				+1.2
2,545,035	+				+1.9
2,545,043	-				-0.7
2,545,058	+				+0.0
2,545,083	-				+0.8
2,545,111	+		PGA1_c24380	0.11	+0.2
2,545,111	+		PGA1_c24380	0.11	-1.8
2,545,111	+		PGA1_c24380	0.11	-0.9
2,545,119	-		PGA1_c24380	0.12	+1.1
2,545,119	-		PGA1_c24380	0.12	+0.0
2,545,119	-		PGA1_c24380	0.12	-0.2
2,545,177	-		PGA1_c24380	0.21	+0.5
2,545,178	-		PGA1_c24380	0.21	+1.8
2,545,180	-		PGA1_c24380	0.22	-1.7
2,545,182	-		PGA1_c24380	0.22	-0.1
2,545,182	-		PGA1_c24380	0.22	+0.6
2,545,249	-		PGA1_c24380	0.33	+1.3
2,545,263	+		PGA1_c24380	0.35	+0.1
2,545,263	+		PGA1_c24380	0.35	-0.7
2,545,270	-		PGA1_c24380	0.36	-0.9
2,545,294	-		PGA1_c24380	0.40	+0.3
2,545,308	+		PGA1_c24380	0.42	-0.9
2,545,316	-		PGA1_c24380	0.44	-1.1
2,545,323	+		PGA1_c24380	0.45	+0.2
2,545,361	+		PGA1_c24380	0.51	+0.9
2,545,363	+		PGA1_c24380	0.51	-0.4
2,545,363	-		PGA1_c24380	0.51	-1.0
2,545,380	-		PGA1_c24380	0.54	-0.8
2,545,390	+		PGA1_c24380	0.56	-1.4
2,545,400	+		PGA1_c24380	0.57	+0.8
2,545,400	+		PGA1_c24380	0.57	+1.1
2,545,400	+		PGA1_c24380	0.57	+1.0
2,545,400	+		PGA1_c24380	0.57	-1.4
2,545,400	+		PGA1_c24380	0.57	-1.2
2,545,400	+		PGA1_c24380	0.57	+0.5
2,545,400	+		PGA1_c24380	0.57	-1.7
2,545,408	-		PGA1_c24380	0.59	-0.4
2,545,408	-		PGA1_c24380	0.59	-0.1
2,545,408	-		PGA1_c24380	0.59	+0.1
2,545,408	-		PGA1_c24380	0.59	-0.3
2,545,408	-		PGA1_c24380	0.59	-2.1
2,545,412	-		PGA1_c24380	0.59	+0.8
2,545,419	+		PGA1_c24380	0.60	+1.7
2,545,422	-		PGA1_c24380	0.61	+0.2
2,545,437	+		PGA1_c24380	0.63	-1.5
2,545,444	-		PGA1_c24380	0.64	+0.3
2,545,445	-		PGA1_c24380	0.65	+1.0
2,545,445	-		PGA1_c24380	0.65	+0.9
2,545,445	-		PGA1_c24380	0.65	+2.2
2,545,509	-		PGA1_c24380	0.75	+0.1
2,545,509	-		PGA1_c24380	0.75	+0.6
2,545,559	+		PGA1_c24380	0.83	-0.1
2,545,565	-		PGA1_c24380	0.84	+2.1
2,545,567	-		PGA1_c24380	0.84	+0.2
2,545,567	-		PGA1_c24380	0.84	-2.1
2,545,572	-		PGA1_c24380	0.85	+0.3
2,545,574	+		PGA1_c24380	0.85	-1.5
2,545,577	-		PGA1_c24380	0.86	+0.0
2,545,586	+		PGA1_c24380	0.87	+1.1
2,545,688	+				+0.0
2,545,689	+				-0.6
2,545,689	+				-0.1
2,545,689	+				+0.7
2,545,689	+				+0.3
2,545,697	-				+0.5
2,545,697	-				+0.7
2,545,716	+				+0.7
2,545,716	+				+0.9
2,545,732	-				-0.7
2,545,740	+				+1.1
2,545,748	-				+0.2
2,545,748	-				-0.7
2,545,748	-				-0.5
2,545,756	-				-1.7
2,545,781	+				-0.7
2,545,781	+				-0.8
2,545,836	+				+2.8
2,545,844	-				+0.1
2,545,873	+				-1.0
2,545,873	+				+2.6
2,545,873	+				-0.1
2,545,876	-				+0.5
2,545,878	+				-0.1
2,545,878	+				+0.8
2,545,878	+				-1.2
2,545,878	+				+0.3
2,545,878	+				-2.1
2,545,878	+				-0.1
2,545,878	+				+0.3
2,545,878	+				+0.1
2,545,878	+				-0.8
2,545,878	+				-0.4
2,545,878	+				+1.8
2,545,878	+				+0.1
2,545,878	+				-1.4
2,545,878	+				+0.5
2,545,878	+				-0.4
2,545,881	-				-0.5
2,545,886	-				-1.7
2,545,886	-				-0.6
2,545,886	-				+1.4
2,545,886	-				+0.3
2,545,886	-				-0.4
2,545,886	-				-1.7
2,545,886	-				+0.8
2,545,886	-				-0.5
2,545,886	-				+0.8
2,545,886	-				+2.1
2,545,886	-				+0.5
2,545,886	-				-0.5
2,545,886	-				+0.9
2,545,886	-				+0.6
2,545,886	-				+0.3
2,545,886	-				-2.5
2,545,886	-				-0.3
2,545,886	-				-0.3
2,545,914	+				-0.5
2,545,922	-				+1.4
2,545,930	-				-1.6
2,545,930	-				-1.1
2,545,930	-				-0.1
2,545,936	+				+0.3
2,545,939	-				+0.4
2,545,939	-				+0.8
2,545,941	+				+2.3
2,545,980	+				-0.2
2,545,984	-				-0.2
2,545,994	-				-0.2