Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24190

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,521,440	-		PGA1_c24180	0.24	+0.1
2,521,648	+		PGA1_c24180	0.45	-1.1
2,521,648	+		PGA1_c24180	0.45	-0.5
2,521,696	+		PGA1_c24180	0.49	-1.9
2,521,704	-		PGA1_c24180	0.50	-3.0
2,521,720	+		PGA1_c24180	0.52	-0.1
2,521,744	-		PGA1_c24180	0.54	-2.4
2,521,758	-		PGA1_c24180	0.55	+0.7
2,521,794	+		PGA1_c24180	0.59	-1.1
2,521,802	-		PGA1_c24180	0.60	+0.5
2,521,802	-		PGA1_c24180	0.60	+0.2
2,521,802	-		PGA1_c24180	0.60	-0.2
2,521,888	+		PGA1_c24180	0.68	-0.4
2,521,929	+		PGA1_c24180	0.72	-0.9
2,522,004	-		PGA1_c24180	0.79	-0.2
2,522,009	-		PGA1_c24180	0.80	+0.2
2,522,165	-				-0.6
2,522,211	+				-1.9
2,522,331	-				-2.1
2,522,375	+				+0.1
2,522,456	-				+0.5
2,522,604	+				-0.1
2,522,612	-		PGA1_c24190	0.10	-1.2
2,522,686	+		PGA1_c24190	0.13	-2.1
2,522,687	+		PGA1_c24190	0.13	-1.6
2,522,692	+		PGA1_c24190	0.13	-0.4
2,522,745	-		PGA1_c24190	0.16	-1.1
2,522,771	+		PGA1_c24190	0.17	-1.1
2,522,771	+		PGA1_c24190	0.17	-2.5
2,522,771	+		PGA1_c24190	0.17	-1.0
2,522,771	+		PGA1_c24190	0.17	-1.5
2,522,771	+		PGA1_c24190	0.17	-1.4
2,522,771	+		PGA1_c24190	0.17	-0.5
2,522,771	+		PGA1_c24190	0.17	-1.9
2,522,771	+		PGA1_c24190	0.17	-2.1
2,522,771	+		PGA1_c24190	0.17	-2.1
2,522,771	+		PGA1_c24190	0.17	-1.4
2,522,771	+		PGA1_c24190	0.17	-3.4
2,522,779	-		PGA1_c24190	0.17	-0.1
2,522,779	-		PGA1_c24190	0.17	-2.1
2,522,779	-		PGA1_c24190	0.17	+3.5
2,522,779	-		PGA1_c24190	0.17	-0.3
2,522,779	-		PGA1_c24190	0.17	+1.0
2,522,779	-		PGA1_c24190	0.17	-0.1
2,522,779	-		PGA1_c24190	0.17	-0.1
2,522,779	-		PGA1_c24190	0.17	+0.5
2,522,779	-		PGA1_c24190	0.17	-1.2
2,522,779	-		PGA1_c24190	0.17	+0.0
2,522,779	-		PGA1_c24190	0.17	-2.7
2,522,779	-				-1.1
2,522,779	-		PGA1_c24190	0.17	-0.9
2,522,779	-		PGA1_c24190	0.17	-1.5
2,522,779	-		PGA1_c24190	0.17	+1.2
2,522,779	-		PGA1_c24190	0.17	+0.0
2,522,779	-		PGA1_c24190	0.17	-1.5
2,522,779	-		PGA1_c24190	0.17	-1.0
2,522,779	-		PGA1_c24190	0.17	-3.0
2,522,779	-		PGA1_c24190	0.17	-2.5
2,522,779	-		PGA1_c24190	0.17	-0.9
2,522,779	-		PGA1_c24190	0.17	-2.0
2,522,779	-		PGA1_c24190	0.17	+1.3
2,522,781	+		PGA1_c24190	0.17	-0.8
2,522,809	-		PGA1_c24190	0.18	-2.5
2,522,869	+		PGA1_c24190	0.20	-1.2
2,522,876	+		PGA1_c24190	0.21	-1.9
2,522,884	-		PGA1_c24190	0.21	-0.1
2,522,884	-		PGA1_c24190	0.21	-2.9
2,522,884	-		PGA1_c24190	0.21	-1.5
2,522,884	-		PGA1_c24190	0.21	-1.5
2,522,884	-		PGA1_c24190	0.21	-0.8
2,522,892	-		PGA1_c24190	0.21	+0.3
2,522,954	+		PGA1_c24190	0.24	+0.5
2,522,962	-		PGA1_c24190	0.24	-0.0
2,522,963	+		PGA1_c24190	0.24	-0.8
2,523,153	+		PGA1_c24190	0.32	-0.5
2,523,161	-		PGA1_c24190	0.32	-0.3
2,523,172	+		PGA1_c24190	0.33	-2.8
2,523,173	-		PGA1_c24190	0.33	-1.1
2,523,173	-		PGA1_c24190	0.33	-0.7
2,523,200	+		PGA1_c24190	0.34	-0.6
2,523,256	+		PGA1_c24190	0.36	-1.1
2,523,256	+		PGA1_c24190	0.36	-0.3
2,523,299	-		PGA1_c24190	0.38	-0.4
2,523,304	-		PGA1_c24190	0.38	-1.2
2,523,346	+		PGA1_c24190	0.40	-0.4
2,523,346	+		PGA1_c24190	0.40	-0.4
2,523,346	+		PGA1_c24190	0.40	-1.2
2,523,354	-		PGA1_c24190	0.40	-0.2
2,523,354	-		PGA1_c24190	0.40	-0.5
2,523,376	-		PGA1_c24190	0.41	-0.1
2,523,417	+		PGA1_c24190	0.42	-0.1
2,523,417	+		PGA1_c24190	0.42	+0.2
2,523,430	+		PGA1_c24190	0.43	+0.3
2,523,481	+		PGA1_c24190	0.45	-2.4
2,523,638	+		PGA1_c24190	0.51	-2.0
2,523,784	+		PGA1_c24190	0.57	-0.5
2,523,792	-		PGA1_c24190	0.57	-1.3
2,523,803	-		PGA1_c24190	0.58	-1.1
2,523,860	-		PGA1_c24190	0.60	+0.5
2,523,860	-		PGA1_c24190	0.60	+0.1
2,523,860	-		PGA1_c24190	0.60	-1.1
2,523,860	-		PGA1_c24190	0.60	-0.8
2,523,917	+		PGA1_c24190	0.62	-1.6
2,523,925	-		PGA1_c24190	0.63	+0.7
2,524,022	+		PGA1_c24190	0.67	-0.9
2,524,032	-		PGA1_c24190	0.67	-0.1
2,524,034	+		PGA1_c24190	0.67	-0.7
2,524,121	+		PGA1_c24190	0.70	-0.5
2,524,121	+		PGA1_c24190	0.70	+1.8
2,524,121	+		PGA1_c24190	0.70	-0.2
2,524,126	-		PGA1_c24190	0.71	+0.2
2,524,129	-		PGA1_c24190	0.71	-0.9
2,524,134	-		PGA1_c24190	0.71	-2.1
2,524,152	+		PGA1_c24190	0.72	+0.3
2,524,152	+		PGA1_c24190	0.72	-0.0
2,524,177	-		PGA1_c24190	0.73	-1.4
2,524,187	-		PGA1_c24190	0.73	-3.4
2,524,226	-		PGA1_c24190	0.75	-2.5
2,524,228	-		PGA1_c24190	0.75	-1.0
2,524,251	-		PGA1_c24190	0.76	+0.5
2,524,298	-		PGA1_c24190	0.78	-0.5
2,524,298	-		PGA1_c24190	0.78	+0.5
2,524,315	-		PGA1_c24190	0.78	-1.1
2,524,507	+		PGA1_c24190	0.86	-1.9
2,524,507	+		PGA1_c24190	0.86	+0.5
2,524,515	-		PGA1_c24190	0.86	-1.0
2,524,544	-		PGA1_c24190	0.87	-0.4
2,524,590	-		PGA1_c24190	0.89	-0.8
2,524,637	+				-1.9
2,524,700	-				-2.1
2,524,724	+				-0.4
2,524,732	-				-1.1
2,524,762	+				-1.2
2,524,770	-				+0.2
2,524,800	+				+0.5
2,524,800	+				-1.7
2,524,805	+				+2.6
2,524,805	+				-0.7
2,524,808	-				+0.7
2,524,868	-				-0.5
2,524,935	+				-1.2
2,524,943	-				-0.5
2,524,944	+				-1.4
2,525,024	+				-0.5
2,525,087	+				+0.3
2,525,146	+		PGA1_c24200	0.23	+0.2
2,525,211	-		PGA1_c24200	0.37	-0.5
2,525,226	-		PGA1_c24200	0.40	-1.5
2,525,253	+		PGA1_c24200	0.46	-1.9
2,525,299	+		PGA1_c24200	0.56	-2.9
2,525,370	-		PGA1_c24200	0.71	-1.0
2,525,400	+		PGA1_c24200	0.78	-0.9
2,525,400	+		PGA1_c24200	0.78	+1.5
2,525,400	+		PGA1_c24200	0.78	-2.9
2,525,400	+		PGA1_c24200	0.78	-2.4
2,525,400	+		PGA1_c24200	0.78	-0.1
2,525,400	+		PGA1_c24200	0.78	-1.9
2,525,400	+		PGA1_c24200	0.78	-2.4
2,525,408	-		PGA1_c24200	0.80	-1.3
2,525,408	-		PGA1_c24200	0.80	+0.9
2,525,410	+		PGA1_c24200	0.80	+1.0
2,525,431	-		PGA1_c24200	0.85	-1.5
2,525,453	+		PGA1_c24200	0.90	+0.2
2,525,713	+				-1.5
2,525,716	-				-1.2
2,525,845	+		PGA1_c24210	0.17	+0.1
2,525,853	-		PGA1_c24210	0.18	-1.5