Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20090

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,084,071	+				-2.2
2,084,071	+				-0.2
2,084,071	+				-1.2
2,084,071	+				-1.2
2,084,071	+				-1.3
2,084,071	+				+0.4
2,084,071	+				-1.8
2,084,071	+				-2.6
2,084,071	+				-1.4
2,084,071	+				-1.6
2,084,071	+				-0.4
2,084,071	+				-0.3
2,084,104	-		PGA1_c20090	0.11	-1.2
2,084,127	-		PGA1_c20090	0.16	-2.9
2,084,149	+		PGA1_c20090	0.22	-2.9
2,084,153	-		PGA1_c20090	0.23	+0.9
2,084,157	-		PGA1_c20090	0.24	-0.6
2,084,194	-		PGA1_c20090	0.33	-1.2
2,084,203	-		PGA1_c20090	0.35	+2.5
2,084,209	-		PGA1_c20090	0.36	-2.8
2,084,239	-		PGA1_c20090	0.43	-0.9
2,084,260	+		PGA1_c20090	0.49	-2.8
2,084,265	+		PGA1_c20090	0.50	-0.8
2,084,265	+		PGA1_c20090	0.50	-1.5
2,084,265	+		PGA1_c20090	0.50	-1.6
2,084,265	+		PGA1_c20090	0.50	+0.7
2,084,268	-		PGA1_c20090	0.50	-0.6
2,084,268	-		PGA1_c20090	0.50	-0.1
2,084,268	-		PGA1_c20090	0.50	+0.8
2,084,273	-		PGA1_c20090	0.52	-0.4
2,084,283	-		PGA1_c20090	0.54	+0.7
2,084,297	+		PGA1_c20090	0.57	-0.4
2,084,298	+		PGA1_c20090	0.58	-0.4
2,084,299	+		PGA1_c20090	0.58	+0.2
2,084,299	+		PGA1_c20090	0.58	+0.3
2,084,305	-		PGA1_c20090	0.59	-0.3
2,084,305	-		PGA1_c20090	0.59	+0.4
2,084,305	-		PGA1_c20090	0.59	-0.2
2,084,313	+		PGA1_c20090	0.61	-1.0
2,084,313	+		PGA1_c20090	0.61	-0.8
2,084,321	-		PGA1_c20090	0.63	-1.1
2,084,337	+		PGA1_c20090	0.67	-1.4
2,084,414	+		PGA1_c20090	0.86	-0.1
2,084,422	-		PGA1_c20090	0.88	-0.9
2,084,443	+				-0.1
2,084,518	+		PGA1_c20100	0.13	-0.6
2,084,525	-		PGA1_c20100	0.15	-1.2
2,084,556	-		PGA1_c20100	0.23	+0.4
2,084,628	+		PGA1_c20100	0.43	-0.6
2,084,636	+		PGA1_c20100	0.45	+1.2
2,084,644	-		PGA1_c20100	0.47	+0.4
2,084,644	-		PGA1_c20100	0.47	-1.2
2,084,684	-		PGA1_c20100	0.58	+1.2
2,084,698	-		PGA1_c20100	0.62	+1.6
2,084,758	+		PGA1_c20100	0.78	-1.2
2,084,758	+		PGA1_c20100	0.78	-2.0
2,084,758	+		PGA1_c20100	0.78	-1.4
2,084,758	+		PGA1_c20100	0.78	-0.8
2,084,758	+		PGA1_c20100	0.78	-1.9
2,084,758	+		PGA1_c20100	0.78	-0.8
2,084,758	+		PGA1_c20100	0.78	-0.0
2,084,764	-		PGA1_c20100	0.79	-1.6
2,084,766	-		PGA1_c20100	0.80	+1.4
2,084,766	-		PGA1_c20100	0.80	-1.2
2,084,766	-		PGA1_c20100	0.80	-1.2
2,084,766	-		PGA1_c20100	0.80	+0.4
2,084,766	-		PGA1_c20100	0.80	-2.6
2,084,779	-		PGA1_c20100	0.83	+0.4
2,084,779	-		PGA1_c20100	0.83	-0.7
2,084,779	-		PGA1_c20100	0.83	+0.4
2,084,849	+				-1.2
2,084,849	+				-0.9
2,084,850	+				+1.0
2,084,857	-				-2.4
2,084,875	-				-0.6
2,084,890	+				-0.2
2,084,890	+				-1.6
2,084,896	+				-2.4
2,084,901	+				-1.2
2,084,901	+				-2.4
2,084,904	+				-0.6
2,084,909	-				+1.4
2,084,909	-				-1.9
2,084,909	-				-1.5
2,084,940	-				-0.2
2,084,966	+				-0.6
2,084,966	+				+1.4
2,084,966	+				-2.4
2,084,974	-				-2.6
2,084,974	-				-0.5
2,084,974	-				-1.9
2,084,974	-				-0.2
2,084,978	-				-0.8
2,084,978	-				-1.6
2,084,983	-				+0.8
2,085,006	+				-2.6
2,085,014	-				-1.2
2,085,032	-				-0.4
2,085,070	+				-1.9
2,085,100	-		PGA1_c20110	0.10	+0.7
2,085,101	+		PGA1_c20110	0.10	-1.4
2,085,101	+		PGA1_c20110	0.10	-0.2
2,085,101	+		PGA1_c20110	0.10	+1.0
2,085,101	+		PGA1_c20110	0.10	-0.1
2,085,101	+		PGA1_c20110	0.10	+2.4
2,085,101	+		PGA1_c20110	0.10	-0.3
2,085,104	-		PGA1_c20110	0.10	-1.7
2,085,104	-		PGA1_c20110	0.10	+0.1
2,085,109	-		PGA1_c20110	0.11	-1.7
2,085,109	-		PGA1_c20110	0.11	+0.4
2,085,109	-		PGA1_c20110	0.11	-1.2
2,085,109	-		PGA1_c20110	0.11	-0.2
2,085,109	-		PGA1_c20110	0.11	+2.0
2,085,109	-		PGA1_c20110	0.11	-0.0
2,085,109	-		PGA1_c20110	0.11	+1.2
2,085,109	-		PGA1_c20110	0.11	-1.6
2,085,109	-		PGA1_c20110	0.11	+1.2
2,085,109	-		PGA1_c20110	0.11	+1.1
2,085,109	-		PGA1_c20110	0.11	+0.2
2,085,109	-		PGA1_c20110	0.11	+0.0
2,085,109	-		PGA1_c20110	0.11	-1.6
2,085,109	-		PGA1_c20110	0.11	+0.4
2,085,111	+		PGA1_c20110	0.11	-1.2
2,085,111	+		PGA1_c20110	0.11	-0.6
2,085,111	-		PGA1_c20110	0.11	-0.6
2,085,117	-		PGA1_c20110	0.11	+0.6
2,085,119	-		PGA1_c20110	0.11	-0.9
2,085,135	-		PGA1_c20110	0.12	-0.2
2,085,137	+		PGA1_c20110	0.12	-1.4
2,085,142	+		PGA1_c20110	0.13	-1.2
2,085,145	-		PGA1_c20110	0.13	+1.7
2,085,145	-		PGA1_c20110	0.13	-1.4
2,085,145	-		PGA1_c20110	0.13	+1.6
2,085,145	-		PGA1_c20110	0.13	-0.2
2,085,147	+		PGA1_c20110	0.13	-1.2
2,085,147	+		PGA1_c20110	0.13	-2.8
2,085,147	+		PGA1_c20110	0.13	+0.0
2,085,147	+		PGA1_c20110	0.13	-0.8
2,085,155	-		PGA1_c20110	0.13	+0.3
2,085,155	-		PGA1_c20110	0.13	+0.4
2,085,160	-		PGA1_c20110	0.14	-0.9
2,085,160	-		PGA1_c20110	0.14	-0.3
2,085,170	-		PGA1_c20110	0.14	-1.2
2,085,182	+		PGA1_c20110	0.15	+0.7
2,085,185	-		PGA1_c20110	0.15	-0.6
2,085,190	-		PGA1_c20110	0.15	-2.2
2,085,195	+		PGA1_c20110	0.16	-0.3
2,085,220	-		PGA1_c20110	0.17	-0.2
2,085,240	-		PGA1_c20110	0.19	-1.2
2,085,252	+		PGA1_c20110	0.19	-0.6
2,085,252	+		PGA1_c20110	0.19	-0.2
2,085,252	+		PGA1_c20110	0.19	-0.6
2,085,252	+		PGA1_c20110	0.19	-3.4
2,085,260	-		PGA1_c20110	0.20	-0.6
2,085,260	-		PGA1_c20110	0.20	-0.6
2,085,278	+		PGA1_c20110	0.21	-2.9
2,085,278	+		PGA1_c20110	0.21	-0.8
2,085,278	+		PGA1_c20110	0.21	-0.4
2,085,286	-		PGA1_c20110	0.21	+2.0
2,085,286	-		PGA1_c20110	0.21	+0.4
2,085,345	+		PGA1_c20110	0.25	-2.0
2,085,381	+		PGA1_c20110	0.27	-0.3
2,085,397	-		PGA1_c20110	0.28	-0.6
2,085,397	-		PGA1_c20110	0.28	+1.0
2,085,397	-		PGA1_c20110	0.28	-1.2
2,085,397	-		PGA1_c20110	0.28	+0.0
2,085,397	-		PGA1_c20110	0.28	+1.4
2,085,399	+		PGA1_c20110	0.28	-2.8
2,085,399	+		PGA1_c20110	0.28	-0.4
2,085,399	+		PGA1_c20110	0.28	-1.7
2,085,407	-		PGA1_c20110	0.29	+1.4
2,085,412	-		PGA1_c20110	0.29	-1.9
2,085,417	+		PGA1_c20110	0.29	-1.6
2,085,417	+		PGA1_c20110	0.29	-1.2
2,085,417	+		PGA1_c20110	0.29	-0.9
2,085,425	-		PGA1_c20110	0.30	+0.1
2,085,425	-		PGA1_c20110	0.30	+1.4
2,085,425	-		PGA1_c20110	0.30	+0.2
2,085,469	+		PGA1_c20110	0.32	-2.8