Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18400

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,917,777	+		PGA1_c18370	0.35	+1.5
1,917,783	+		PGA1_c18370	0.36	+0.4
1,917,807	+		PGA1_c18370	0.40	+0.4
1,917,810	-		PGA1_c18370	0.41	+0.1
1,917,830	-		PGA1_c18370	0.44	-1.3
1,917,926	-		PGA1_c18370	0.62	-1.7
1,917,977	+		PGA1_c18370	0.71	+1.2
1,917,977	+		PGA1_c18370	0.71	+1.2
1,917,977	+		PGA1_c18370	0.71	+0.8
1,918,020	+		PGA1_c18370	0.79	-1.3
1,918,130	+				+0.9
1,918,138	-				-1.4
1,918,154	+				+1.7
1,918,162	-				-0.4
1,918,162	-				-0.4
1,918,162	-				+0.7
1,918,162	-				-0.2
1,918,162	-				+0.6
1,918,181	+		PGA1_c18380	0.13	-0.1
1,918,201	-		PGA1_c18380	0.20	-2.6
1,918,285	+		PGA1_c18380	0.47	+0.8
1,918,429	+				+0.7
1,918,454	-				-0.3
1,918,479	-		PGA1_c18390	0.13	+1.0
1,918,525	+		PGA1_c18390	0.32	-0.6
1,918,550	+		PGA1_c18390	0.43	+0.8
1,918,560	+		PGA1_c18390	0.48	+0.3
1,918,568	-		PGA1_c18390	0.51	+1.1
1,918,568	-		PGA1_c18390	0.51	-1.5
1,918,568	-		PGA1_c18390	0.51	-1.4
1,918,568	-		PGA1_c18390	0.51	-0.9
1,918,700	-				+0.2
1,918,700	-				+0.5
1,918,700	-				+0.9
1,918,733	+				+0.3
1,918,781	+				+0.5
1,918,781	+				-0.5
1,918,874	+				+2.2
1,919,040	-		PGA1_c18400	0.14	+0.0
1,919,042	-		PGA1_c18400	0.14	+0.2
1,919,194	+		PGA1_c18400	0.22	-0.3
1,919,194	-		PGA1_c18400	0.22	+0.0
1,919,202	-		PGA1_c18400	0.22	-0.4
1,919,239	+		PGA1_c18400	0.24	+1.0
1,919,239	+		PGA1_c18400	0.24	+0.4
1,919,256	+		PGA1_c18400	0.25	-0.4
1,919,264	-		PGA1_c18400	0.25	-0.1
1,919,264	-		PGA1_c18400	0.25	-2.6
1,919,264	-		PGA1_c18400	0.25	-0.9
1,919,264	-		PGA1_c18400	0.25	-1.8
1,919,276	-		PGA1_c18400	0.26	-0.4
1,919,285	+		PGA1_c18400	0.26	-0.8
1,919,290	+		PGA1_c18400	0.26	+0.4
1,919,290	+		PGA1_c18400	0.26	+2.8
1,919,290	+		PGA1_c18400	0.26	+1.9
1,919,314	+		PGA1_c18400	0.28	+1.0
1,919,324	+		PGA1_c18400	0.28	-0.1
1,919,324	+		PGA1_c18400	0.28	+1.4
1,919,332	-		PGA1_c18400	0.28	+0.8
1,919,373	-		PGA1_c18400	0.30	+0.7
1,919,384	-		PGA1_c18400	0.31	-0.1
1,919,390	-		PGA1_c18400	0.31	-1.3
1,919,393	+		PGA1_c18400	0.31	+0.4
1,919,484	-		PGA1_c18400	0.36	+0.8
1,919,490	+		PGA1_c18400	0.36	+1.1
1,919,490	+		PGA1_c18400	0.36	+1.6
1,919,604	-		PGA1_c18400	0.42	+0.9
1,919,617	+		PGA1_c18400	0.42	-1.3
1,919,625	-		PGA1_c18400	0.43	+0.7
1,919,684	-		PGA1_c18400	0.46	+0.7
1,919,749	+		PGA1_c18400	0.49	-0.4
1,919,759	+		PGA1_c18400	0.49	+0.7
1,919,824	-		PGA1_c18400	0.53	+0.8
1,919,843	+		PGA1_c18400	0.54	+0.2
1,919,868	+		PGA1_c18400	0.55	-1.0
1,919,898	+		PGA1_c18400	0.56	-0.1
1,919,925	+		PGA1_c18400	0.58	+0.4
1,919,941	-		PGA1_c18400	0.58	+2.0
1,919,946	-		PGA1_c18400	0.59	+0.6
1,919,946	-		PGA1_c18400	0.59	-0.2
1,920,011	+		PGA1_c18400	0.62	-0.7
1,920,021	+		PGA1_c18400	0.62	+0.2
1,920,021	+		PGA1_c18400	0.62	+0.5
1,920,029	-		PGA1_c18400	0.63	+0.4
1,920,029	-		PGA1_c18400	0.63	-0.2
1,920,029	-		PGA1_c18400	0.63	-0.4
1,920,035	+		PGA1_c18400	0.63	-2.1
1,920,069	-		PGA1_c18400	0.65	+0.3
1,920,089	+		PGA1_c18400	0.66	+1.0
1,920,168	+		PGA1_c18400	0.70	-0.3
1,920,178	+		PGA1_c18400	0.70	+0.5
1,920,202	+		PGA1_c18400	0.71	+0.1
1,920,205	-		PGA1_c18400	0.71	+0.1
1,920,260	+		PGA1_c18400	0.74	-0.1
1,920,260	+		PGA1_c18400	0.74	+2.1
1,920,263	-		PGA1_c18400	0.74	+0.1
1,920,263	-		PGA1_c18400	0.74	+2.3
1,920,263	-		PGA1_c18400	0.74	-0.5
1,920,268	-		PGA1_c18400	0.74	+0.9
1,920,268	-		PGA1_c18400	0.74	+0.7
1,920,280	-		PGA1_c18400	0.75	+0.6
1,920,323	-		PGA1_c18400	0.77	-1.9
1,920,324	+		PGA1_c18400	0.77	+0.4
1,920,372	-		PGA1_c18400	0.80	-0.8
1,920,452	+		PGA1_c18400	0.84	-0.1
1,920,457	+		PGA1_c18400	0.84	+1.3
1,920,509	+		PGA1_c18400	0.86	+0.2
1,920,511	+		PGA1_c18400	0.86	-0.6
1,920,577	-		PGA1_c18400	0.90	-1.3
1,920,577	-		PGA1_c18400	0.90	+0.5
1,920,577	-		PGA1_c18400	0.90	-1.0
1,920,651	-				-0.0
1,920,701	-				-0.1
1,920,718	+				+1.0
1,920,718	+				+1.0
1,920,721	-				-1.0
1,920,726	-				-0.1
1,920,726	-				+0.3
1,920,726	-				-0.4
1,920,728	+				-1.0
1,920,728	+				+0.7
1,920,728	+				-0.1
1,920,728	+				-1.6
1,920,728	+				+2.0
1,920,728	+				-0.6
1,920,728	+				+0.6
1,920,728	+				-1.9
1,920,728	+				+0.5
1,920,736	-				+0.7
1,920,736	-				-0.3
1,920,736	-				+0.4
1,920,736	-				+1.1
1,920,784	-				+0.2
1,920,785	-				-1.2
1,920,850	-				+0.6
1,920,850	-				-0.4
1,920,850	-				+0.7
1,920,850	-				+0.1
1,920,871	+				+0.7
1,920,888	-				+2.7
1,920,889	-				+0.5
1,920,889	-				+0.0
1,920,917	+				-0.5
1,921,000	-		PGA1_c18410	0.15	+0.5
1,921,011	-		PGA1_c18410	0.15	-0.1
1,921,049	+		PGA1_c18410	0.18	+0.6
1,921,052	-		PGA1_c18410	0.18	-1.1
1,921,160	-		PGA1_c18410	0.25	+0.2
1,921,259	+		PGA1_c18410	0.31	+0.3
1,921,274	+		PGA1_c18410	0.32	+1.1
1,921,274	+		PGA1_c18410	0.32	+1.3
1,921,284	-		PGA1_c18410	0.33	+1.6
1,921,297	+		PGA1_c18410	0.34	+0.4
1,921,309	+		PGA1_c18410	0.35	-0.4
1,921,309	+		PGA1_c18410	0.35	+2.9
1,921,314	+		PGA1_c18410	0.35	-1.1
1,921,322	-		PGA1_c18410	0.36	-0.6
1,921,328	-		PGA1_c18410	0.36	+1.3
1,921,357	+		PGA1_c18410	0.38	+1.2
1,921,364	+		PGA1_c18410	0.38	+0.1
1,921,383	+		PGA1_c18410	0.40	+1.2
1,921,388	+		PGA1_c18410	0.40	+1.0
1,921,428	+		PGA1_c18410	0.43	-0.9
1,921,431	+		PGA1_c18410	0.43	+0.8
1,921,443	+		PGA1_c18410	0.44	+1.3
1,921,449	+		PGA1_c18410	0.44	-0.2
1,921,457	+		PGA1_c18410	0.44	-0.4
1,921,465	-		PGA1_c18410	0.45	+2.7
1,921,507	-		PGA1_c18410	0.48	+2.0
1,921,509	+		PGA1_c18410	0.48	-2.4
1,921,549	+		PGA1_c18410	0.50	-0.2
1,921,549	+		PGA1_c18410	0.50	+0.4
1,921,549	+		PGA1_c18410	0.50	-0.8
1,921,549	+		PGA1_c18410	0.50	+1.3
1,921,557	-		PGA1_c18410	0.51	+0.1
1,921,557	-		PGA1_c18410	0.51	-0.1
1,921,557	-		PGA1_c18410	0.51	+0.6
1,921,557	-		PGA1_c18410	0.51	+2.2
1,921,557	-		PGA1_c18410	0.51	+0.5
1,921,584	-		PGA1_c18410	0.53	+1.5
1,921,612	+		PGA1_c18410	0.55	-0.1
1,921,615	-		PGA1_c18410	0.55	+0.1
1,921,634	+		PGA1_c18410	0.56	+1.4
1,921,673	-		PGA1_c18410	0.59	-2.0
1,921,675	+		PGA1_c18410	0.59	-1.3
1,921,730	-		PGA1_c18410	0.62	-0.0
1,921,760	+		PGA1_c18410	0.64	+1.2