Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1723 and HP15_1724 are separated by 172 nucleotides HP15_1724 and HP15_1725 are separated by 40 nucleotides HP15_1725 and HP15_1726 overlap by 1 nucleotides
HP15_1723: HP15_1723 - hydrolase, carbon-nitrogen family protein, at 1,822,063 to 1,823,583
_1723
HP15_1724: HP15_1724 - conserved hypothetical protein, at 1,823,756 to 1,824,154
_1724
HP15_1725: HP15_1725 - conserved hypothetical protein, at 1,824,195 to 1,824,863
_1725
HP15_1726: HP15_1726 - selenide water dikinase, at 1,824,863 to 1,827,139
_1726
Position (kb)
1823
1824
1825 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1822.899 kb on + strand, within HP15_1723 at 1822.902 kb on - strand, within HP15_1723 at 1823.002 kb on - strand, within HP15_1723 at 1823.022 kb on + strand, within HP15_1723 at 1823.085 kb on + strand, within HP15_1723 at 1823.296 kb on + strand, within HP15_1723 at 1823.304 kb on - strand, within HP15_1723 at 1823.411 kb on - strand, within HP15_1723 at 1823.510 kb on - strand at 1824.037 kb on + strand, within HP15_1724 at 1824.435 kb on + strand, within HP15_1725 at 1824.491 kb on + strand, within HP15_1725 at 1824.547 kb on - strand, within HP15_1725 at 1824.596 kb on + strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.706 kb on - strand, within HP15_1725 at 1824.797 kb on + strand at 1824.870 kb on - strand at 1824.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,822,899 + HP15_1723 0.55 -0.4 1,822,902 - HP15_1723 0.55 +2.1 1,823,002 - HP15_1723 0.62 +0.2 1,823,022 + HP15_1723 0.63 +1.5 1,823,085 + HP15_1723 0.67 -1.8 1,823,296 + HP15_1723 0.81 +0.4 1,823,304 - HP15_1723 0.82 +1.0 1,823,411 - HP15_1723 0.89 +0.4 1,823,510 - -0.2 1,824,037 + HP15_1724 0.70 -1.0 1,824,435 + HP15_1725 0.36 +0.2 1,824,491 + HP15_1725 0.44 +0.4 1,824,547 - HP15_1725 0.53 +0.7 1,824,596 + HP15_1725 0.60 +0.3 1,824,706 - HP15_1725 0.76 +2.8 1,824,706 - HP15_1725 0.76 +1.0 1,824,797 + +1.1 1,824,870 - +0.6 1,824,902 - +0.5
Or see this region's nucleotide sequence