Strain Fitness in Shewanella amazonensis SB2B around Sama_2870

Experiment: casaminos (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (N)
3,407,031	+				-1.4
3,407,032	-				+0.8
3,407,086	+		Sama_2869	0.11	-0.3
3,407,086	+		Sama_2869	0.11	-2.0
3,407,086	+		Sama_2869	0.11	-0.3
3,407,086	+		Sama_2869	0.11	-0.2
3,407,086	+		Sama_2869	0.11	-0.0
3,407,086	+		Sama_2869	0.11	+0.7
3,407,087	-		Sama_2869	0.11	-0.9
3,407,087	-		Sama_2869	0.11	-0.9
3,407,087	-		Sama_2869	0.11	+0.7
3,407,112	+		Sama_2869	0.14	+0.6
3,407,148	-		Sama_2869	0.19	-0.9
3,407,170	-		Sama_2869	0.21	+0.8
3,407,170	-		Sama_2869	0.21	-0.3
3,407,222	-		Sama_2869	0.28	-1.2
3,407,222	-		Sama_2869	0.28	-0.1
3,407,329	+		Sama_2869	0.41	-0.6
3,407,329	+		Sama_2869	0.41	+0.2
3,407,330	-		Sama_2869	0.41	+1.0
3,407,330	-		Sama_2869	0.41	+0.8
3,407,340	+		Sama_2869	0.42	-0.6
3,407,340	+		Sama_2869	0.42	-0.2
3,407,340	+		Sama_2869	0.42	-0.8
3,407,340	+		Sama_2869	0.42	-1.1
3,407,340	+		Sama_2869	0.42	+1.1
3,407,340	+		Sama_2869	0.42	+0.2
3,407,341	-		Sama_2869	0.42	-0.9
3,407,341	-		Sama_2869	0.42	+0.2
3,407,341	-		Sama_2869	0.42	-0.5
3,407,341	-		Sama_2869	0.42	+0.7
3,407,359	+		Sama_2869	0.44	-0.3
3,407,359	+		Sama_2869	0.44	+0.9
3,407,359	+		Sama_2869	0.44	-0.1
3,407,360	-		Sama_2869	0.44	-0.3
3,407,360	-		Sama_2869	0.44	+0.7
3,407,360	-		Sama_2869	0.44	+1.6
3,407,393	-		Sama_2869	0.48	+1.4
3,407,393	-		Sama_2869	0.48	+0.1
3,407,393	-		Sama_2869	0.48	+0.0
3,407,393	-		Sama_2869	0.48	-0.1
3,407,393	-		Sama_2869	0.48	+0.5
3,407,450	+		Sama_2869	0.55	-0.8
3,407,450	+		Sama_2869	0.55	-0.4
3,407,502	-		Sama_2869	0.62	-0.4
3,407,502	-		Sama_2869	0.62	-0.8
3,407,577	-		Sama_2869	0.71	-1.3
3,407,608	+		Sama_2869	0.74	-0.1
3,407,609	-		Sama_2869	0.75	-1.0
3,407,609	-		Sama_2869	0.75	+1.2
3,407,609	-		Sama_2869	0.75	-1.8
3,407,609	-		Sama_2869	0.75	+0.2
3,407,701	+		Sama_2869	0.86	+0.7
3,407,702	-		Sama_2869	0.86	+0.1
3,407,796	+				-0.6
3,407,797	-				+0.2
3,407,797	-				+1.7
3,407,862	+				+1.6
3,407,862	+				+0.8
3,407,863	-				-0.6
3,407,864	+				-0.1
3,407,865	-				-0.4
3,407,865	-				-0.4
3,407,887	+				-0.9
3,407,888	-				-0.5
3,407,888	-				+0.2
3,407,922	+				+0.7
3,407,922	+				+0.4
3,407,922	+				-0.8
3,407,922	+				-0.3
3,407,923	-				+0.7
3,407,957	+				+0.2
3,407,957	+				+0.8
3,407,957	+				+0.1
3,407,958	-				-1.3
3,407,996	+				-1.5
3,408,036	+				+0.7
3,408,037	-				-1.7
3,408,091	+				+0.2
3,408,091	+				-0.1
3,408,092	-				-0.6
3,408,107	+		Sama_2870	0.11	-0.8
3,408,107	+		Sama_2870	0.11	+0.1
3,408,107	+		Sama_2870	0.11	-0.8
3,408,108	-		Sama_2870	0.11	-0.9
3,408,108	-		Sama_2870	0.11	-0.9
3,408,108	-		Sama_2870	0.11	-0.9
3,408,110	+		Sama_2870	0.11	-1.5
3,408,110	+		Sama_2870	0.11	-0.9
3,408,110	+		Sama_2870	0.11	+1.1
3,408,110	+		Sama_2870	0.11	-0.6
3,408,111	-		Sama_2870	0.11	-1.4
3,408,111	-		Sama_2870	0.11	-0.6
3,408,141	+		Sama_2870	0.14	+0.7
3,408,142	-		Sama_2870	0.14	-1.7
3,408,142	-		Sama_2870	0.14	+0.1
3,408,161	-		Sama_2870	0.16	+0.4
3,408,163	+		Sama_2870	0.16	-0.6
3,408,163	+		Sama_2870	0.16	-1.0
3,408,163	+		Sama_2870	0.16	+0.7
3,408,163	+		Sama_2870	0.16	-1.2
3,408,164	-		Sama_2870	0.16	-2.4
3,408,207	-		Sama_2870	0.20	-0.8
3,408,207	-		Sama_2870	0.20	-2.8
3,408,218	-		Sama_2870	0.21	-0.6
3,408,218	-		Sama_2870	0.21	-0.6
3,408,218	-		Sama_2870	0.21	-0.6
3,408,292	+		Sama_2870	0.29	+0.7
3,408,349	+		Sama_2870	0.34	-1.6
3,408,349	+		Sama_2870	0.34	-0.8
3,408,349	+		Sama_2870	0.34	-0.8
3,408,349	+		Sama_2870	0.34	+0.4
3,408,349	+		Sama_2870	0.34	-1.0
3,408,350	-		Sama_2870	0.34	-0.6
3,408,350	-		Sama_2870	0.34	-0.6
3,408,350	-		Sama_2870	0.34	+0.7
3,408,350	-		Sama_2870	0.34	-0.9
3,408,350	-		Sama_2870	0.34	-1.7
3,408,384	-		Sama_2870	0.38	-2.5
3,408,384	-		Sama_2870	0.38	-0.8
3,408,384	-		Sama_2870	0.38	+1.1
3,408,384	-		Sama_2870	0.38	-0.3
3,408,395	+		Sama_2870	0.39	+0.4
3,408,396	-		Sama_2870	0.39	-1.7
3,408,426	+		Sama_2870	0.42	+0.1
3,408,427	-		Sama_2870	0.42	+1.1
3,408,520	-		Sama_2870	0.51	-1.0
3,408,595	+		Sama_2870	0.58	-1.6
3,408,595	+		Sama_2870	0.58	-0.5
3,408,596	-		Sama_2870	0.58	+1.1
3,408,597	+		Sama_2870	0.58	-2.9
3,408,609	+		Sama_2870	0.59	-1.2
3,408,609	+		Sama_2870	0.59	-1.3
3,408,609	+		Sama_2870	0.59	-1.6
3,408,610	-		Sama_2870	0.59	-0.1
3,408,610	-		Sama_2870	0.59	-0.9
3,408,610	-		Sama_2870	0.59	-1.1
3,408,640	+		Sama_2870	0.62	-0.6
3,408,640	+		Sama_2870	0.62	-1.3
3,408,640	+		Sama_2870	0.62	-1.4
3,408,641	-		Sama_2870	0.62	-1.3
3,408,641	-		Sama_2870	0.62	-2.0
3,408,641	-		Sama_2870	0.62	-0.8
3,408,641	-		Sama_2870	0.62	-3.6
3,408,657	+		Sama_2870	0.64	-0.6
3,408,657	+		Sama_2870	0.64	-1.7
3,408,658	-		Sama_2870	0.64	-1.0
3,408,787	+		Sama_2870	0.77	-0.5
3,408,788	-		Sama_2870	0.77	-1.1
3,408,814	+		Sama_2870	0.79	-0.8
3,408,815	-		Sama_2870	0.79	-1.7
3,408,873	+		Sama_2870	0.85	-0.8
3,408,873	+		Sama_2870	0.85	-0.3
3,408,874	-		Sama_2870	0.85	-0.1
3,408,955	+				-0.8
3,409,077	+				-0.1
3,409,100	+				-0.8
3,409,101	-				+0.5
3,409,126	-				+0.5
3,409,242	-				+0.6
3,409,260	-				-0.4
3,409,260	-				+0.6
3,409,260	-				-0.8
3,409,260	-				+0.0
3,409,260	-				+0.9
3,409,335	-		Sama_2871	0.13	-0.3
3,409,398	+		Sama_2871	0.17	-0.7
3,409,399	-		Sama_2871	0.17	+0.0
3,409,399	-		Sama_2871	0.17	-0.3
3,409,399	-		Sama_2871	0.17	+0.5
3,409,399	-		Sama_2871	0.17	-0.2
3,409,399	-		Sama_2871	0.17	+0.2
3,409,400	+		Sama_2871	0.17	+0.8
3,409,400	+		Sama_2871	0.17	-0.0
3,409,400	+		Sama_2871	0.17	-2.1
3,409,400	+		Sama_2871	0.17	-0.0
3,409,400	+		Sama_2871	0.17	+0.0
3,409,400	+		Sama_2871	0.17	-2.0
3,409,400	+		Sama_2871	0.17	-0.9
3,409,400	+		Sama_2871	0.17	+0.5
3,409,401	-		Sama_2871	0.17	-1.2
3,409,401	-		Sama_2871	0.17	+0.1
3,409,401	-		Sama_2871	0.17	+0.3
3,409,401	-		Sama_2871	0.17	-0.2
3,409,401	-		Sama_2871	0.17	-1.5
3,409,468	+		Sama_2871	0.21	+0.5
3,409,468	+		Sama_2871	0.21	+0.4
3,409,469	-		Sama_2871	0.21	+0.6
3,409,476	-		Sama_2871	0.21	-1.9
3,409,521	+		Sama_2871	0.24	+0.2
3,409,521	+		Sama_2871	0.24	+0.7
3,409,521	+		Sama_2871	0.24	+0.1
3,409,522	-		Sama_2871	0.24	+1.5
3,409,522	-		Sama_2871	0.24	-0.2
3,409,522	-		Sama_2871	0.24	-0.3
3,409,522	-		Sama_2871	0.24	+0.7
3,409,522	-		Sama_2871	0.24	+0.0
3,409,525	+		Sama_2871	0.24	+0.4
3,409,525	+		Sama_2871	0.24	+0.1
3,409,526	-		Sama_2871	0.24	+0.8
3,409,526	-		Sama_2871	0.24	-0.7
3,409,562	+		Sama_2871	0.26	+0.8
3,409,562	+		Sama_2871	0.26	-0.2
3,409,563	-		Sama_2871	0.27	-0.8
3,409,564	+		Sama_2871	0.27	+1.8
3,409,564	+		Sama_2871	0.27	+0.4
3,409,564	+		Sama_2871	0.27	-3.0
3,409,565	-		Sama_2871	0.27	-0.7
3,409,565	-		Sama_2871	0.27	+0.2
3,409,578	+		Sama_2871	0.27	-0.2
3,409,579	-		Sama_2871	0.27	-0.0
3,409,579	-		Sama_2871	0.27	+0.5
3,409,587	-		Sama_2871	0.28	-0.5
3,409,702	-		Sama_2871	0.35	+0.7
3,409,721	+		Sama_2871	0.36	-0.1
3,409,721	+		Sama_2871	0.36	-0.0
3,409,721	+		Sama_2871	0.36	-0.0
3,409,721	+		Sama_2871	0.36	-0.0
3,409,721	+		Sama_2871	0.36	-0.3
3,409,721	+		Sama_2871	0.36	-0.8
3,409,721	+		Sama_2871	0.36	-0.5
3,409,722	-		Sama_2871	0.36	+0.6
3,409,722	-		Sama_2871	0.36	-0.4
3,409,722	-		Sama_2871	0.36	+0.4
3,409,723	+		Sama_2871	0.36	-0.5
3,409,723	+		Sama_2871	0.36	-1.8
3,409,723	+		Sama_2871	0.36	-0.6
3,409,723	+		Sama_2871	0.36	-0.1
3,409,723	+		Sama_2871	0.36	-0.6
3,409,723	+		Sama_2871	0.36	+0.7
3,409,723	+		Sama_2871	0.36	+0.5
3,409,723	+		Sama_2871	0.36	+0.4
3,409,723	+		Sama_2871	0.36	+0.8
3,409,723	+		Sama_2871	0.36	-0.1
3,409,723	+		Sama_2871	0.36	-0.9
3,409,723	+		Sama_2871	0.36	-1.1
3,409,724	-		Sama_2871	0.36	+1.1
3,409,724	-		Sama_2871	0.36	-1.0
3,409,724	-		Sama_2871	0.36	-0.4
3,409,724	-		Sama_2871	0.36	-1.8
3,409,724	-		Sama_2871	0.36	-0.5
3,409,724	-		Sama_2871	0.36	+0.1
3,409,724	-		Sama_2871	0.36	-0.9
3,409,724	-		Sama_2871	0.36	-1.1
3,409,724	-		Sama_2871	0.36	+0.1
3,409,724	-		Sama_2871	0.36	-1.0
3,409,724	-		Sama_2871	0.36	-1.1
3,409,724	-		Sama_2871	0.36	-0.9
3,409,724	-		Sama_2871	0.36	+1.0
3,409,724	-		Sama_2871	0.36	-0.4
3,409,724	-		Sama_2871	0.36	-0.6
3,409,765	+		Sama_2871	0.38	-1.1
3,409,766	-		Sama_2871	0.39	-0.8
3,409,832	+		Sama_2871	0.42	+1.5
3,409,832	+		Sama_2871	0.42	-0.1
3,409,832	+		Sama_2871	0.42	-1.4
3,409,833	-		Sama_2871	0.42	+0.2
3,409,833	-		Sama_2871	0.42	-0.1
3,409,846	-		Sama_2871	0.43	+0.4
3,409,873	+		Sama_2871	0.45	-0.1
3,409,873	+		Sama_2871	0.45	+0.0
3,409,873	+		Sama_2871	0.45	-1.2
3,409,874	-		Sama_2871	0.45	-0.2
3,409,874	-		Sama_2871	0.45	-1.3
3,409,874	-		Sama_2871	0.45	-0.5
3,409,874	-		Sama_2871	0.45	+0.6
3,409,874	-		Sama_2871	0.45	+0.4
3,409,874	-		Sama_2871	0.45	+0.9
3,409,874	-		Sama_2871	0.45	-1.1
3,409,893	+		Sama_2871	0.46	+0.3
3,409,893	+		Sama_2871	0.46	+0.4
3,409,983	-		Sama_2871	0.51	+0.2
3,410,022	+		Sama_2871	0.54	+0.5
3,410,023	-		Sama_2871	0.54	+0.7
3,410,023	-		Sama_2871	0.54	-0.8