Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0492 and Sama_0493 are separated by 633 nucleotides Sama_0493 and Sama_0494 are separated by 29 nucleotides
Sama_0492: Sama_0492 - sodium/proline symporter (RefSeq), at 604,192 to 605,688
_0492
Sama_0493: Sama_0493 - transcriptional regulator (RefSeq), at 606,322 to 606,675
_0493
Sama_0494: Sama_0494 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 606,705 to 607,718
_0494
Position (kb) 606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 605.391 kb on + strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.474 kb on + strand, within Sama_0492 at 605.484 kb on + strand, within Sama_0492 at 605.484 kb on + strand, within Sama_0492 at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.588 kb on + strand at 605.588 kb on + strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.613 kb on + strand at 605.613 kb on + strand at 605.614 kb on - strand at 605.632 kb on + strand at 605.655 kb on - strand at 605.671 kb on - strand at 605.751 kb on - strand at 605.755 kb on - strand at 605.755 kb on - strand at 605.931 kb on + strand at 605.985 kb on + strand at 605.988 kb on + strand at 605.988 kb on + strand at 605.988 kb on + strand at 605.992 kb on + strand at 605.992 kb on + strand at 605.997 kb on + strand at 606.192 kb on + strand at 606.193 kb on - strand at 606.215 kb on + strand at 606.235 kb on + strand at 606.235 kb on + strand at 606.236 kb on - strand at 606.236 kb on - strand at 606.249 kb on + strand at 606.249 kb on + strand at 606.271 kb on + strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.286 kb on - strand at 606.291 kb on + strand at 606.292 kb on - strand at 606.305 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.348 kb on - strand at 606.348 kb on - strand at 606.348 kb on - strand at 606.378 kb on + strand, within Sama_0493 at 606.387 kb on + strand, within Sama_0493 at 606.387 kb on + strand, within Sama_0493 at 606.388 kb on - strand, within Sama_0493 at 606.396 kb on + strand, within Sama_0493 at 606.396 kb on + strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.450 kb on + strand, within Sama_0493 at 606.451 kb on - strand, within Sama_0493 at 606.451 kb on - strand, within Sama_0493 at 606.482 kb on + strand, within Sama_0493 at 606.482 kb on + strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.542 kb on - strand, within Sama_0493 at 606.673 kb on + strand at 606.674 kb on - strand at 606.710 kb on + strand at 606.711 kb on - strand at 606.716 kb on + strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.721 kb on + strand at 606.721 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.726 kb on - strand at 606.726 kb on - strand at 606.760 kb on + strand at 606.760 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.797 kb on - strand at 606.797 kb on - strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.902 kb on + strand, within Sama_0494 at 606.902 kb on + strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.091 kb on + strand, within Sama_0494 at 607.092 kb on - strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.144 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.196 kb on + strand, within Sama_0494 at 607.313 kb on + strand, within Sama_0494 at 607.314 kb on - strand, within Sama_0494 at 607.322 kb on + strand, within Sama_0494 at 607.323 kb on - strand, within Sama_0494 at 607.323 kb on - strand, within Sama_0494 at 607.355 kb on + strand, within Sama_0494 at 607.355 kb on + strand, within Sama_0494 at 607.362 kb on - strand, within Sama_0494 at 607.560 kb on + strand, within Sama_0494 at 607.560 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.627 kb on + strand at 607.627 kb on + strand at 607.627 kb on + strand at 607.627 kb on + strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 605,391 + Sama_0492 0.80 -0.1 605,424 - Sama_0492 0.82 -0.5 605,424 - Sama_0492 0.82 -0.0 605,424 - Sama_0492 0.82 -0.9 605,474 + Sama_0492 0.86 +0.1 605,484 + Sama_0492 0.86 +0.5 605,484 + Sama_0492 0.86 -1.5 605,586 + -0.6 605,586 + +0.2 605,586 + -0.3 605,586 + +0.4 605,586 + -0.0 605,587 - +0.4 605,587 - +0.3 605,587 - +1.0 605,587 - -0.5 605,588 + +0.0 605,588 + +0.6 605,589 - -0.1 605,589 - -0.5 605,589 - +0.5 605,589 - +0.4 605,613 + -0.6 605,613 + -0.1 605,614 - +0.4 605,632 + -1.7 605,655 - -0.8 605,671 - -0.7 605,751 - -0.7 605,755 - +2.2 605,755 - +1.0 605,931 + +0.5 605,985 + -0.4 605,988 + -0.5 605,988 + -0.0 605,988 + +0.1 605,992 + +0.4 605,992 + -0.4 605,997 + -1.2 606,192 + +0.5 606,193 - -0.8 606,215 + +0.2 606,235 + +1.3 606,235 + +0.1 606,236 - -0.1 606,236 - -1.1 606,249 + -0.4 606,249 + +0.4 606,271 + -0.5 606,272 - +1.1 606,272 - -0.9 606,272 - -0.1 606,272 - +0.0 606,286 - -0.0 606,291 + -0.2 606,292 - -0.6 606,305 + +0.2 606,319 + -0.6 606,319 + -1.1 606,319 + +0.1 606,319 + -0.4 606,319 + -0.4 606,319 + +0.1 606,319 + -0.2 606,319 + -0.5 606,319 + -0.0 606,319 + -1.2 606,319 + -0.0 606,319 + +1.0 606,319 + +1.1 606,319 + -0.7 606,320 - +0.0 606,320 - -1.8 606,320 - +0.5 606,320 - +1.4 606,320 - -0.7 606,320 - -0.6 606,320 - -0.0 606,320 - -0.6 606,320 - -0.1 606,320 - -0.4 606,320 - +0.0 606,320 - +0.0 606,347 + +0.1 606,347 + +1.6 606,347 + -0.3 606,347 + +0.6 606,347 + -1.1 606,347 + +0.2 606,347 + -1.1 606,348 - -1.6 606,348 - +1.4 606,348 - -0.1 606,378 + Sama_0493 0.16 -1.0 606,387 + Sama_0493 0.18 +3.1 606,387 + Sama_0493 0.18 -0.3 606,388 - Sama_0493 0.19 +0.7 606,396 + Sama_0493 0.21 +0.1 606,396 + Sama_0493 0.21 +0.2 606,397 - Sama_0493 0.21 -0.6 606,397 - Sama_0493 0.21 -0.3 606,397 - Sama_0493 0.21 -0.7 606,450 + Sama_0493 0.36 +0.1 606,451 - Sama_0493 0.36 +1.2 606,451 - Sama_0493 0.36 -0.5 606,482 + Sama_0493 0.45 +0.9 606,482 + Sama_0493 0.45 -1.4 606,483 - Sama_0493 0.45 -0.3 606,483 - Sama_0493 0.45 -1.5 606,483 - Sama_0493 0.45 -1.6 606,539 - Sama_0493 0.61 +0.1 606,539 - Sama_0493 0.61 +1.3 606,539 - Sama_0493 0.61 -0.0 606,542 - Sama_0493 0.62 -0.1 606,673 + +2.0 606,674 - -0.8 606,710 + +0.4 606,711 - +0.2 606,716 + -1.0 606,717 - -0.9 606,717 - +0.4 606,717 - -0.4 606,717 - +0.7 606,717 - +0.5 606,721 + -0.8 606,721 + +1.0 606,725 + +0.4 606,725 + -1.1 606,725 + -0.7 606,725 + +1.5 606,725 + -0.0 606,726 - +1.0 606,726 - +1.7 606,760 + -0.8 606,760 + +1.7 606,796 + -0.2 606,796 + -2.3 606,796 + +0.0 606,796 + -2.3 606,796 + -0.4 606,797 - +0.7 606,797 - -0.5 606,800 + +0.2 606,800 + +0.7 606,800 + -0.1 606,800 + -0.7 606,800 + -0.6 606,800 + -2.4 606,800 + +0.6 606,801 - +0.0 606,801 - -0.9 606,801 - -0.3 606,801 - -1.4 606,801 - +1.7 606,902 + Sama_0494 0.19 -3.1 606,902 + Sama_0494 0.19 -0.4 606,936 - Sama_0494 0.23 -0.3 606,936 - Sama_0494 0.23 +0.8 606,936 - Sama_0494 0.23 +0.5 607,029 + Sama_0494 0.32 -1.3 607,029 + Sama_0494 0.32 -2.2 607,029 + Sama_0494 0.32 +0.9 607,029 + Sama_0494 0.32 -0.3 607,030 - Sama_0494 0.32 +0.2 607,030 - Sama_0494 0.32 -0.1 607,030 - Sama_0494 0.32 -0.1 607,030 - Sama_0494 0.32 +0.8 607,030 - Sama_0494 0.32 +0.4 607,030 - Sama_0494 0.32 -0.5 607,030 - Sama_0494 0.32 +1.2 607,091 + Sama_0494 0.38 -1.1 607,092 - Sama_0494 0.38 +0.2 607,122 + Sama_0494 0.41 -0.3 607,122 + Sama_0494 0.41 -0.2 607,122 + Sama_0494 0.41 -0.3 607,122 + Sama_0494 0.41 -0.5 607,122 + Sama_0494 0.41 -0.6 607,122 + Sama_0494 0.41 -0.9 607,122 + Sama_0494 0.41 -0.1 607,122 + Sama_0494 0.41 +0.3 607,123 - Sama_0494 0.41 -0.5 607,123 - Sama_0494 0.41 -1.0 607,123 - Sama_0494 0.41 +0.1 607,123 - Sama_0494 0.41 +0.2 607,123 - Sama_0494 0.41 -1.8 607,123 - Sama_0494 0.41 -0.8 607,123 - Sama_0494 0.41 -0.6 607,123 - Sama_0494 0.41 +0.4 607,123 - Sama_0494 0.41 +0.0 607,123 - Sama_0494 0.41 +0.3 607,124 + Sama_0494 0.41 -0.8 607,124 + Sama_0494 0.41 -1.7 607,124 + Sama_0494 0.41 -0.6 607,144 + Sama_0494 0.43 -0.8 607,148 + Sama_0494 0.44 -0.0 607,148 + Sama_0494 0.44 -0.9 607,148 + Sama_0494 0.44 -1.2 607,149 - Sama_0494 0.44 +0.9 607,149 - Sama_0494 0.44 -0.7 607,149 - Sama_0494 0.44 +2.0 607,149 - Sama_0494 0.44 -0.4 607,149 - Sama_0494 0.44 +1.0 607,196 + Sama_0494 0.48 -0.6 607,313 + Sama_0494 0.60 -0.2 607,314 - Sama_0494 0.60 +0.7 607,322 + Sama_0494 0.61 +0.0 607,323 - Sama_0494 0.61 -0.1 607,323 - Sama_0494 0.61 +0.2 607,355 + Sama_0494 0.64 +1.2 607,355 + Sama_0494 0.64 +0.5 607,362 - Sama_0494 0.65 +1.0 607,560 + Sama_0494 0.84 -0.3 607,560 + Sama_0494 0.84 -1.9 607,588 + Sama_0494 0.87 -0.2 607,588 + Sama_0494 0.87 +1.5 607,588 + Sama_0494 0.87 -0.9 607,588 + Sama_0494 0.87 +0.2 607,588 + Sama_0494 0.87 +0.2 607,588 + Sama_0494 0.87 -0.2 607,588 + Sama_0494 0.87 -0.2 607,588 + Sama_0494 0.87 -0.5 607,588 + Sama_0494 0.87 +0.7 607,588 + Sama_0494 0.87 -1.9 607,588 + Sama_0494 0.87 -0.1 607,588 + Sama_0494 0.87 +1.0 607,588 + Sama_0494 0.87 +0.4 607,588 + Sama_0494 0.87 +0.2 607,588 + Sama_0494 0.87 +1.0 607,588 + Sama_0494 0.87 -0.4 607,588 + Sama_0494 0.87 +0.1 607,589 - Sama_0494 0.87 -1.7 607,589 - Sama_0494 0.87 -0.1 607,589 - Sama_0494 0.87 -0.2 607,589 - Sama_0494 0.87 -0.9 607,589 - Sama_0494 0.87 +0.2 607,589 - Sama_0494 0.87 -1.2 607,589 - Sama_0494 0.87 -0.8 607,627 + +0.1 607,627 + -0.8 607,627 + +0.2 607,627 + -0.9 607,628 - -0.3 607,628 - +0.2 607,628 - -0.5 607,628 - -0.3 607,633 + -0.2 607,633 + +0.3 607,633 + -1.7 607,633 + +1.0 607,633 + -0.6 607,633 + -0.0 607,633 + +0.1 607,633 + -0.4 607,633 + -0.5 607,633 + +0.1 607,634 - -0.5 607,634 - -0.1 607,634 - +0.9 607,634 - +0.5 607,634 - +0.1 607,634 - -1.5 607,635 + +0.4 607,635 + -1.0 607,635 + -0.3 607,635 + -0.6 607,635 + -0.6 607,635 + -0.8 607,636 - +1.3 607,636 - +0.3 607,636 - +0.1 607,636 - -0.5 607,644 + +0.7
Or see this region's nucleotide sequence