Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4118

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4116 and Dshi_4117 overlap by 4 nucleotidesDshi_4117 and Dshi_4118 are separated by 34 nucleotidesDshi_4118 and Dshi_4119 are separated by 131 nucleotides Dshi_4116: Dshi_4116 - hypothetical protein (RefSeq), at 48,022 to 48,855 _4116 Dshi_4117: Dshi_4117 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 48,852 to 49,709 _4117 Dshi_4118: Dshi_4118 - glucose-1-phosphate thymidylyltransferase (RefSeq), at 49,744 to 50,616 _4118 Dshi_4119: Dshi_4119 - NAD-dependent epimerase/dehydratase (RefSeq), at 50,748 to 51,629 _4119 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1at 48.879 kb on - strandat 49.199 kb on + strand, within Dshi_4117at 49.279 kb on + strand, within Dshi_4117at 49.350 kb on + strand, within Dshi_4117at 49.485 kb on + strand, within Dshi_4117at 49.791 kb on + strandat 49.799 kb on - strandat 49.834 kb on + strand, within Dshi_4118at 50.053 kb on + strand, within Dshi_4118at 50.073 kb on - strand, within Dshi_4118at 50.098 kb on - strand, within Dshi_4118at 50.154 kb on - strand, within Dshi_4118at 50.191 kb on + strand, within Dshi_4118at 50.311 kb on + strand, within Dshi_4118at 50.323 kb on + strand, within Dshi_4118at 50.350 kb on + strand, within Dshi_4118at 50.501 kb on + strand, within Dshi_4118at 50.563 kb on - strandat 50.594 kb on + strandat 50.672 kb on + strandat 50.680 kb on - strandat 50.701 kb on - strandat 50.766 kb on + strandat 51.188 kb on + strand, within Dshi_4119at 51.189 kb on + strand, within Dshi_4119at 51.375 kb on + strand, within Dshi_4119at 51.375 kb on + strand, within Dshi_4119

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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48,879 - +1.0
49,199 + Dshi_4117 0.40 +1.0
49,279 + Dshi_4117 0.50 +1.4
49,350 + Dshi_4117 0.58 +1.4
49,485 + Dshi_4117 0.74 +0.8
49,791 + +1.0
49,799 - +1.4
49,834 + Dshi_4118 0.10 +1.3
50,053 + Dshi_4118 0.35 +1.5
50,073 - Dshi_4118 0.38 +0.6
50,098 - Dshi_4118 0.41 +1.7
50,154 - Dshi_4118 0.47 -0.1
50,191 + Dshi_4118 0.51 +0.9
50,311 + Dshi_4118 0.65 +0.6
50,323 + Dshi_4118 0.66 +1.7
50,350 + Dshi_4118 0.69 +1.2
50,501 + Dshi_4118 0.87 +1.2
50,563 - +1.6
50,594 + +1.7
50,672 + -0.3
50,680 - -0.5
50,701 - +0.3
50,766 + +0.5
51,188 + Dshi_4119 0.50 +0.7
51,189 + Dshi_4119 0.50 +0.6
51,375 + Dshi_4119 0.71 +0.4
51,375 + Dshi_4119 0.71 +0.1

Or see this region's nucleotide sequence