Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3531

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3530 and Dshi_3531 are separated by 97 nucleotidesDshi_3531 and Dshi_3532 are separated by 42 nucleotides Dshi_3530: Dshi_3530 - bacteriochlorophyll/chlorophyll synthetase (RefSeq), at 3,710,051 to 3,710,956 _3530 Dshi_3531: Dshi_3531 - transcriptional regulator, Fis family (RefSeq), at 3,711,054 to 3,712,484 _3531 Dshi_3532: Dshi_3532 - cobalamin B12-binding domain protein (RefSeq), at 3,712,527 to 3,713,387 _3532 Position (kb) 3711 3712 3713Strain fitness (log2 ratio) -2 -1 0 1at 3710.125 kb on + strandat 3710.175 kb on + strand, within Dshi_3530at 3710.330 kb on + strand, within Dshi_3530at 3710.338 kb on - strand, within Dshi_3530at 3710.500 kb on - strand, within Dshi_3530at 3710.520 kb on - strand, within Dshi_3530at 3710.561 kb on - strand, within Dshi_3530at 3710.670 kb on - strand, within Dshi_3530at 3710.783 kb on - strand, within Dshi_3530at 3710.816 kb on - strand, within Dshi_3530at 3710.830 kb on - strand, within Dshi_3530at 3710.830 kb on - strand, within Dshi_3530at 3710.834 kb on + strand, within Dshi_3530at 3710.835 kb on - strand, within Dshi_3530at 3710.852 kb on + strand, within Dshi_3530at 3710.879 kb on + strandat 3710.894 kb on - strandat 3710.894 kb on - strandat 3710.905 kb on - strandat 3710.979 kb on - strandat 3710.991 kb on + strandat 3711.769 kb on - strand, within Dshi_3531at 3711.820 kb on + strand, within Dshi_3531at 3711.856 kb on - strand, within Dshi_3531at 3712.361 kb on - strandat 3712.643 kb on - strand, within Dshi_3532at 3712.643 kb on - strand, within Dshi_3532at 3712.743 kb on - strand, within Dshi_3532at 3712.768 kb on - strand, within Dshi_3532at 3712.775 kb on + strand, within Dshi_3532at 3712.792 kb on + strand, within Dshi_3532at 3712.868 kb on + strand, within Dshi_3532at 3712.878 kb on + strand, within Dshi_3532at 3713.013 kb on + strand, within Dshi_3532at 3713.029 kb on + strand, within Dshi_3532at 3713.049 kb on - strand, within Dshi_3532at 3713.123 kb on - strand, within Dshi_3532at 3713.166 kb on - strand, within Dshi_3532at 3713.294 kb on + strand, within Dshi_3532at 3713.302 kb on - strandat 3713.302 kb on - strandat 3713.327 kb on + strandat 3713.342 kb on + strandat 3713.350 kb on - strandat 3713.360 kb on - strandat 3713.360 kb on - strandat 3713.371 kb on - strandat 3713.417 kb on - strandat 3713.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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3,710,125 + -1.1
3,710,175 + Dshi_3530 0.14 -0.7
3,710,330 + Dshi_3530 0.31 -2.1
3,710,338 - Dshi_3530 0.32 -0.4
3,710,500 - Dshi_3530 0.50 -1.7
3,710,520 - Dshi_3530 0.52 -1.0
3,710,561 - Dshi_3530 0.56 -0.4
3,710,670 - Dshi_3530 0.68 -1.8
3,710,783 - Dshi_3530 0.81 +0.1
3,710,816 - Dshi_3530 0.84 -1.7
3,710,830 - Dshi_3530 0.86 -2.7
3,710,830 - Dshi_3530 0.86 -1.4
3,710,834 + Dshi_3530 0.86 -0.5
3,710,835 - Dshi_3530 0.87 +0.2
3,710,852 + Dshi_3530 0.88 +1.1
3,710,879 + -0.4
3,710,894 - -1.4
3,710,894 - -0.4
3,710,905 - -1.7
3,710,979 - -0.4
3,710,991 + +0.8
3,711,769 - Dshi_3531 0.50 -2.5
3,711,820 + Dshi_3531 0.54 -0.6
3,711,856 - Dshi_3531 0.56 -1.5
3,712,361 - -1.9
3,712,643 - Dshi_3532 0.13 +0.9
3,712,643 - Dshi_3532 0.13 +0.4
3,712,743 - Dshi_3532 0.25 +0.7
3,712,768 - Dshi_3532 0.28 +0.6
3,712,775 + Dshi_3532 0.29 +1.6
3,712,792 + Dshi_3532 0.31 +0.6
3,712,868 + Dshi_3532 0.40 +0.9
3,712,878 + Dshi_3532 0.41 -0.2
3,713,013 + Dshi_3532 0.56 +0.7
3,713,029 + Dshi_3532 0.58 +0.6
3,713,049 - Dshi_3532 0.61 -0.4
3,713,123 - Dshi_3532 0.69 +0.4
3,713,166 - Dshi_3532 0.74 +1.1
3,713,294 + Dshi_3532 0.89 +0.4
3,713,302 - +0.4
3,713,302 - +1.4
3,713,327 + -0.6
3,713,342 + -0.1
3,713,350 - +1.4
3,713,360 - -0.4
3,713,360 - -0.1
3,713,371 - +1.3
3,713,417 - +0.2
3,713,455 + -1.4

Or see this region's nucleotide sequence