Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3530 and Dshi_3531 are separated by 97 nucleotides Dshi_3531 and Dshi_3532 are separated by 42 nucleotides
Dshi_3530: Dshi_3530 - bacteriochlorophyll/chlorophyll synthetase (RefSeq), at 3,710,051 to 3,710,956
_3530
Dshi_3531: Dshi_3531 - transcriptional regulator, Fis family (RefSeq), at 3,711,054 to 3,712,484
_3531
Dshi_3532: Dshi_3532 - cobalamin B12-binding domain protein (RefSeq), at 3,712,527 to 3,713,387
_3532
Position (kb)
3711
3712
3713 Strain fitness (log2 ratio)
-2
-1
0
1 at 3710.125 kb on + strand at 3710.175 kb on + strand, within Dshi_3530 at 3710.330 kb on + strand, within Dshi_3530 at 3710.338 kb on - strand, within Dshi_3530 at 3710.500 kb on - strand, within Dshi_3530 at 3710.520 kb on - strand, within Dshi_3530 at 3710.561 kb on - strand, within Dshi_3530 at 3710.670 kb on - strand, within Dshi_3530 at 3710.783 kb on - strand, within Dshi_3530 at 3710.816 kb on - strand, within Dshi_3530 at 3710.830 kb on - strand, within Dshi_3530 at 3710.830 kb on - strand, within Dshi_3530 at 3710.834 kb on + strand, within Dshi_3530 at 3710.835 kb on - strand, within Dshi_3530 at 3710.852 kb on + strand, within Dshi_3530 at 3710.879 kb on + strand at 3710.894 kb on - strand at 3710.894 kb on - strand at 3710.905 kb on - strand at 3710.979 kb on - strand at 3710.991 kb on + strand at 3711.769 kb on - strand, within Dshi_3531 at 3711.820 kb on + strand, within Dshi_3531 at 3711.856 kb on - strand, within Dshi_3531 at 3712.361 kb on - strand at 3712.643 kb on - strand, within Dshi_3532 at 3712.643 kb on - strand, within Dshi_3532 at 3712.743 kb on - strand, within Dshi_3532 at 3712.768 kb on - strand, within Dshi_3532 at 3712.775 kb on + strand, within Dshi_3532 at 3712.792 kb on + strand, within Dshi_3532 at 3712.868 kb on + strand, within Dshi_3532 at 3712.878 kb on + strand, within Dshi_3532 at 3713.013 kb on + strand, within Dshi_3532 at 3713.029 kb on + strand, within Dshi_3532 at 3713.049 kb on - strand, within Dshi_3532 at 3713.123 kb on - strand, within Dshi_3532 at 3713.166 kb on - strand, within Dshi_3532 at 3713.294 kb on + strand, within Dshi_3532 at 3713.302 kb on - strand at 3713.302 kb on - strand at 3713.327 kb on + strand at 3713.342 kb on + strand at 3713.350 kb on - strand at 3713.360 kb on - strand at 3713.360 kb on - strand at 3713.371 kb on - strand at 3713.417 kb on - strand at 3713.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 3,710,125 + -1.1 3,710,175 + Dshi_3530 0.14 -0.7 3,710,330 + Dshi_3530 0.31 -2.1 3,710,338 - Dshi_3530 0.32 -0.4 3,710,500 - Dshi_3530 0.50 -1.7 3,710,520 - Dshi_3530 0.52 -1.0 3,710,561 - Dshi_3530 0.56 -0.4 3,710,670 - Dshi_3530 0.68 -1.8 3,710,783 - Dshi_3530 0.81 +0.1 3,710,816 - Dshi_3530 0.84 -1.7 3,710,830 - Dshi_3530 0.86 -2.7 3,710,830 - Dshi_3530 0.86 -1.4 3,710,834 + Dshi_3530 0.86 -0.5 3,710,835 - Dshi_3530 0.87 +0.2 3,710,852 + Dshi_3530 0.88 +1.1 3,710,879 + -0.4 3,710,894 - -1.4 3,710,894 - -0.4 3,710,905 - -1.7 3,710,979 - -0.4 3,710,991 + +0.8 3,711,769 - Dshi_3531 0.50 -2.5 3,711,820 + Dshi_3531 0.54 -0.6 3,711,856 - Dshi_3531 0.56 -1.5 3,712,361 - -1.9 3,712,643 - Dshi_3532 0.13 +0.9 3,712,643 - Dshi_3532 0.13 +0.4 3,712,743 - Dshi_3532 0.25 +0.7 3,712,768 - Dshi_3532 0.28 +0.6 3,712,775 + Dshi_3532 0.29 +1.6 3,712,792 + Dshi_3532 0.31 +0.6 3,712,868 + Dshi_3532 0.40 +0.9 3,712,878 + Dshi_3532 0.41 -0.2 3,713,013 + Dshi_3532 0.56 +0.7 3,713,029 + Dshi_3532 0.58 +0.6 3,713,049 - Dshi_3532 0.61 -0.4 3,713,123 - Dshi_3532 0.69 +0.4 3,713,166 - Dshi_3532 0.74 +1.1 3,713,294 + Dshi_3532 0.89 +0.4 3,713,302 - +0.4 3,713,302 - +1.4 3,713,327 + -0.6 3,713,342 + -0.1 3,713,350 - +1.4 3,713,360 - -0.4 3,713,360 - -0.1 3,713,371 - +1.3 3,713,417 - +0.2 3,713,455 + -1.4
Or see this region's nucleotide sequence