Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1510

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1509 and Dshi_1510 overlap by 4 nucleotidesDshi_1510 and Dshi_1511 are separated by 399 nucleotides Dshi_1509: Dshi_1509 - DNA ligase, NAD-dependent (RefSeq), at 1,568,730 to 1,570,955 _1509 Dshi_1510: Dshi_1510 - DEAD/DEAH box helicase domain protein (RefSeq), at 1,570,952 to 1,573,042 _1510 Dshi_1511: Dshi_1511 - Carboxypeptidase Taq (RefSeq), at 1,573,442 to 1,574,914 _1511 Position (kb) 1570 1571 1572 1573 1574Strain fitness (log2 ratio) -1 0 1at 1571.001 kb on - strandat 1571.079 kb on - strandat 1571.197 kb on - strand, within Dshi_1510at 1571.373 kb on - strand, within Dshi_1510at 1571.600 kb on - strand, within Dshi_1510at 1571.620 kb on + strand, within Dshi_1510at 1571.797 kb on + strand, within Dshi_1510at 1572.018 kb on - strand, within Dshi_1510at 1572.181 kb on + strand, within Dshi_1510at 1572.434 kb on - strand, within Dshi_1510at 1572.607 kb on - strand, within Dshi_1510at 1572.760 kb on + strand, within Dshi_1510at 1572.760 kb on + strand, within Dshi_1510at 1572.865 kb on - strandat 1573.537 kb on - strandat 1573.714 kb on - strand, within Dshi_1511at 1573.722 kb on - strand, within Dshi_1511at 1573.749 kb on - strand, within Dshi_1511at 1573.779 kb on + strand, within Dshi_1511

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,571,001 - -0.1
1,571,079 - -0.0
1,571,197 - Dshi_1510 0.12 -0.4
1,571,373 - Dshi_1510 0.20 -0.6
1,571,600 - Dshi_1510 0.31 -0.6
1,571,620 + Dshi_1510 0.32 +0.6
1,571,797 + Dshi_1510 0.40 -0.3
1,572,018 - Dshi_1510 0.51 +0.4
1,572,181 + Dshi_1510 0.59 +0.5
1,572,434 - Dshi_1510 0.71 -0.3
1,572,607 - Dshi_1510 0.79 -1.3
1,572,760 + Dshi_1510 0.86 +0.7
1,572,760 + Dshi_1510 0.86 +0.3
1,572,865 - +0.1
1,573,537 - +0.0
1,573,714 - Dshi_1511 0.18 +0.4
1,573,722 - Dshi_1511 0.19 +0.0
1,573,749 - Dshi_1511 0.21 +0.2
1,573,779 + Dshi_1511 0.23 +1.3

Or see this region's nucleotide sequence