Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1075

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1074 and Dshi_1075 are separated by 302 nucleotidesDshi_1075 and Dshi_1076 are separated by 175 nucleotides Dshi_1074: Dshi_1074 - homocysteine S-methyltransferase (RefSeq), at 1,103,070 to 1,104,095 _1074 Dshi_1075: Dshi_1075 - protein of unknown function DUF1476 (RefSeq), at 1,104,398 to 1,104,712 _1075 Dshi_1076: Dshi_1076 - phosphoribosylaminoimidazole-succinocarboxamidesynthase (RefSeq), at 1,104,888 to 1,105,649 _1076 Position (kb) 1104 1105Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1104.207 kb on - strandat 1104.542 kb on - strand, within Dshi_1075at 1104.639 kb on + strand, within Dshi_1075at 1104.710 kb on + strandat 1104.715 kb on - strandat 1104.743 kb on + strandat 1104.751 kb on - strandat 1104.751 kb on - strandat 1104.763 kb on + strandat 1104.769 kb on - strandat 1104.771 kb on - strandat 1104.829 kb on - strandat 1104.857 kb on + strandat 1104.870 kb on - strandat 1105.221 kb on + strand, within Dshi_1076at 1105.283 kb on - strand, within Dshi_1076

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,104,207 - -0.1
1,104,542 - Dshi_1075 0.46 +0.4
1,104,639 + Dshi_1075 0.77 +1.5
1,104,710 + -0.2
1,104,715 - -0.1
1,104,743 + -0.8
1,104,751 - -0.4
1,104,751 - +0.2
1,104,763 + +0.1
1,104,769 - -0.1
1,104,771 - -0.5
1,104,829 - -0.8
1,104,857 + -1.8
1,104,870 - -1.6
1,105,221 + Dshi_1076 0.44 -2.5
1,105,283 - Dshi_1076 0.52 -5.0

Or see this region's nucleotide sequence