Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0746

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0744 and Dshi_0745 are separated by 188 nucleotidesDshi_0745 and Dshi_0746 are separated by 97 nucleotidesDshi_0746 and Dshi_0747 are separated by 92 nucleotides Dshi_0744: Dshi_0744 - prolyl-tRNA synthetase (RefSeq), at 752,138 to 753,475 _0744 Dshi_0745: Dshi_0745 - Redoxin domain protein (RefSeq), at 753,664 to 754,239 _0745 Dshi_0746: Dshi_0746 - MIP family channel protein (RefSeq), at 754,337 to 755,023 _0746 Dshi_0747: Dshi_0747 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 755,116 to 756,402 _0747 Position (kb) 754 755 756Strain fitness (log2 ratio) -1 0 1at 753.477 kb on - strandat 753.492 kb on + strandat 753.537 kb on - strandat 753.574 kb on - strandat 753.644 kb on + strandat 753.652 kb on - strandat 753.678 kb on - strandat 753.758 kb on - strand, within Dshi_0745at 753.796 kb on + strand, within Dshi_0745at 753.825 kb on + strand, within Dshi_0745at 753.876 kb on + strand, within Dshi_0745at 753.908 kb on - strand, within Dshi_0745at 753.972 kb on - strand, within Dshi_0745at 754.086 kb on + strand, within Dshi_0745at 754.105 kb on + strand, within Dshi_0745at 754.223 kb on - strandat 754.223 kb on - strandat 754.337 kb on - strandat 754.469 kb on - strand, within Dshi_0746at 754.475 kb on + strand, within Dshi_0746at 754.483 kb on - strand, within Dshi_0746at 754.486 kb on + strand, within Dshi_0746at 754.549 kb on - strand, within Dshi_0746at 754.554 kb on - strand, within Dshi_0746at 754.629 kb on - strand, within Dshi_0746at 754.654 kb on + strand, within Dshi_0746at 754.658 kb on + strand, within Dshi_0746at 754.707 kb on + strand, within Dshi_0746at 754.913 kb on - strand, within Dshi_0746at 754.935 kb on + strand, within Dshi_0746at 754.937 kb on - strand, within Dshi_0746at 754.962 kb on - strandat 754.991 kb on + strandat 754.996 kb on + strandat 755.030 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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753,477 - +0.5
753,492 + -0.4
753,537 - -0.4
753,574 - -0.2
753,644 + -0.3
753,652 - -0.4
753,678 - -0.0
753,758 - Dshi_0745 0.16 -1.4
753,796 + Dshi_0745 0.23 -0.0
753,825 + Dshi_0745 0.28 -0.8
753,876 + Dshi_0745 0.37 +0.6
753,908 - Dshi_0745 0.42 -0.1
753,972 - Dshi_0745 0.53 -0.7
754,086 + Dshi_0745 0.73 +1.3
754,105 + Dshi_0745 0.77 -0.0
754,223 - -0.1
754,223 - +0.1
754,337 - +0.5
754,469 - Dshi_0746 0.19 +0.0
754,475 + Dshi_0746 0.20 +0.3
754,483 - Dshi_0746 0.21 -0.2
754,486 + Dshi_0746 0.22 +0.1
754,549 - Dshi_0746 0.31 +0.8
754,554 - Dshi_0746 0.32 +0.5
754,629 - Dshi_0746 0.43 -0.6
754,654 + Dshi_0746 0.46 +0.3
754,658 + Dshi_0746 0.47 +0.6
754,707 + Dshi_0746 0.54 +0.6
754,913 - Dshi_0746 0.84 -0.6
754,935 + Dshi_0746 0.87 -0.0
754,937 - Dshi_0746 0.87 -0.3
754,962 - -0.2
754,991 + -0.9
754,996 + +0.9
755,030 - -0.1

Or see this region's nucleotide sequence