Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0670

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0669 and Dshi_0670 are separated by 173 nucleotidesDshi_0670 and Dshi_0671 are separated by 490 nucleotides Dshi_0669: Dshi_0669 - Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq), at 673,560 to 675,041 _0669 Dshi_0670: Dshi_0670 - Haloacid dehalogenase domain protein hydrolase (RefSeq), at 675,215 to 675,919 _0670 Dshi_0671: Dshi_0671 - methyltransferase small (RefSeq), at 676,410 to 677,411 _0671 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1at 675.099 kb on + strandat 675.280 kb on + strandat 675.310 kb on + strand, within Dshi_0670at 675.415 kb on + strand, within Dshi_0670at 675.438 kb on - strand, within Dshi_0670at 675.443 kb on + strand, within Dshi_0670at 675.635 kb on + strand, within Dshi_0670at 675.643 kb on - strand, within Dshi_0670at 675.655 kb on + strand, within Dshi_0670at 675.843 kb on - strand, within Dshi_0670at 675.899 kb on - strandat 675.935 kb on + strandat 675.950 kb on - strandat 676.079 kb on + strandat 676.082 kb on - strandat 676.104 kb on + strandat 676.118 kb on + strandat 676.126 kb on - strandat 676.161 kb on - strandat 676.232 kb on + strandat 676.263 kb on - strandat 676.286 kb on - strandat 676.318 kb on + strandat 676.406 kb on + strandat 676.406 kb on + strandat 676.457 kb on - strandat 676.468 kb on + strandat 676.484 kb on + strandat 676.645 kb on - strand, within Dshi_0671at 676.832 kb on + strand, within Dshi_0671at 676.869 kb on + strand, within Dshi_0671

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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675,099 + -1.4
675,280 + +0.2
675,310 + Dshi_0670 0.13 +0.5
675,415 + Dshi_0670 0.28 +0.6
675,438 - Dshi_0670 0.32 +0.1
675,443 + Dshi_0670 0.32 -1.3
675,635 + Dshi_0670 0.60 -0.0
675,643 - Dshi_0670 0.61 -0.4
675,655 + Dshi_0670 0.62 +0.1
675,843 - Dshi_0670 0.89 +0.6
675,899 - -0.2
675,935 + +0.8
675,950 - -0.3
676,079 + +0.2
676,082 - -1.4
676,104 + +0.1
676,118 + +1.0
676,126 - -0.2
676,161 - -1.2
676,232 + -0.6
676,263 - -1.8
676,286 - +0.4
676,318 + -0.3
676,406 + +0.1
676,406 + +0.3
676,457 - +0.4
676,468 + -0.7
676,484 + -0.9
676,645 - Dshi_0671 0.23 -0.3
676,832 + Dshi_0671 0.42 +0.1
676,869 + Dshi_0671 0.46 -1.0

Or see this region's nucleotide sequence