Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0386

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0385 and Dshi_0386 are separated by 78 nucleotidesDshi_0386 and Dshi_R0005 are separated by 135 nucleotidesDshi_R0005 and Dshi_0387 are separated by 66 nucleotidesDshi_0387 and Dshi_0388 are separated by 206 nucleotides Dshi_0385: Dshi_0385 - DNA-directed DNA polymerase (RefSeq), at 366,959 to 368,212 _0385 Dshi_0386: Dshi_0386 - N-formylglutamate amidohydrolase (RefSeq), at 368,291 to 369,154 _0386 Dshi_R0005: Dshi_R0005 - tRNA-Val (RefSeq), at 369,290 to 369,364 _R0005 Dshi_0387: Dshi_0387 - ribosomal protein L36 (RefSeq), at 369,431 to 369,556 _0387 Dshi_0388: Dshi_0388 - ABC transporter related (RefSeq), at 369,763 to 370,548 _0388 Position (kb) 368 369 370Strain fitness (log2 ratio) -1 0 1at 367.295 kb on - strand, within Dshi_0385at 367.386 kb on - strand, within Dshi_0385at 367.386 kb on - strand, within Dshi_0385at 367.452 kb on + strand, within Dshi_0385at 367.533 kb on + strand, within Dshi_0385at 367.567 kb on - strand, within Dshi_0385at 367.678 kb on + strand, within Dshi_0385at 367.704 kb on - strand, within Dshi_0385at 367.780 kb on - strand, within Dshi_0385at 367.853 kb on + strand, within Dshi_0385at 367.958 kb on - strand, within Dshi_0385at 368.060 kb on - strand, within Dshi_0385at 368.206 kb on + strandat 368.214 kb on - strandat 368.214 kb on - strandat 368.280 kb on + strandat 368.316 kb on - strandat 368.561 kb on + strand, within Dshi_0386at 368.567 kb on - strand, within Dshi_0386at 368.726 kb on - strand, within Dshi_0386at 368.728 kb on + strand, within Dshi_0386at 368.733 kb on + strand, within Dshi_0386at 368.835 kb on - strand, within Dshi_0386at 368.847 kb on - strand, within Dshi_0386at 368.847 kb on - strand, within Dshi_0386at 368.847 kb on - strand, within Dshi_0386at 368.857 kb on + strand, within Dshi_0386at 368.863 kb on + strand, within Dshi_0386at 368.936 kb on - strand, within Dshi_0386at 369.053 kb on - strand, within Dshi_0386at 369.111 kb on + strandat 369.119 kb on - strandat 369.119 kb on - strandat 369.142 kb on - strandat 369.662 kb on - strandat 369.692 kb on + strandat 369.700 kb on - strandat 369.700 kb on - strandat 369.700 kb on - strandat 369.700 kb on - strandat 370.034 kb on - strand, within Dshi_0388at 370.110 kb on + strand, within Dshi_0388

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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367,295 - Dshi_0385 0.27 +0.5
367,386 - Dshi_0385 0.34 +0.7
367,386 - Dshi_0385 0.34 -0.3
367,452 + Dshi_0385 0.39 -0.1
367,533 + Dshi_0385 0.46 +0.1
367,567 - Dshi_0385 0.48 -0.9
367,678 + Dshi_0385 0.57 +0.1
367,704 - Dshi_0385 0.59 +0.3
367,780 - Dshi_0385 0.65 +0.6
367,853 + Dshi_0385 0.71 +0.0
367,958 - Dshi_0385 0.80 -0.3
368,060 - Dshi_0385 0.88 -0.7
368,206 + -0.5
368,214 - +0.4
368,214 - -0.4
368,280 + -0.4
368,316 - +0.6
368,561 + Dshi_0386 0.31 -0.7
368,567 - Dshi_0386 0.32 -0.7
368,726 - Dshi_0386 0.50 -0.5
368,728 + Dshi_0386 0.51 -0.3
368,733 + Dshi_0386 0.51 -1.6
368,835 - Dshi_0386 0.63 -0.9
368,847 - Dshi_0386 0.64 -0.4
368,847 - Dshi_0386 0.64 +0.1
368,847 - Dshi_0386 0.64 -0.1
368,857 + Dshi_0386 0.66 +0.7
368,863 + Dshi_0386 0.66 -1.3
368,936 - Dshi_0386 0.75 -0.4
369,053 - Dshi_0386 0.88 -1.4
369,111 + +0.4
369,119 - -0.2
369,119 - +1.4
369,142 - +0.1
369,662 - -0.3
369,692 + -0.7
369,700 - +0.3
369,700 - +1.6
369,700 - +0.2
369,700 - +0.0
370,034 - Dshi_0388 0.34 +0.7
370,110 + Dshi_0388 0.44 -0.8

Or see this region's nucleotide sequence