Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0385 and Dshi_0386 are separated by 78 nucleotides Dshi_0386 and Dshi_R0005 are separated by 135 nucleotides Dshi_R0005 and Dshi_0387 are separated by 66 nucleotides Dshi_0387 and Dshi_0388 are separated by 206 nucleotides
Dshi_0385: Dshi_0385 - DNA-directed DNA polymerase (RefSeq), at 366,959 to 368,212
_0385
Dshi_0386: Dshi_0386 - N-formylglutamate amidohydrolase (RefSeq), at 368,291 to 369,154
_0386
Dshi_R0005: Dshi_R0005 - tRNA-Val (RefSeq), at 369,290 to 369,364
_R0005
Dshi_0387: Dshi_0387 - ribosomal protein L36 (RefSeq), at 369,431 to 369,556
_0387
Dshi_0388: Dshi_0388 - ABC transporter related (RefSeq), at 369,763 to 370,548
_0388
Position (kb)
368
369
370 Strain fitness (log2 ratio)
-1
0
1 at 367.295 kb on - strand, within Dshi_0385 at 367.386 kb on - strand, within Dshi_0385 at 367.386 kb on - strand, within Dshi_0385 at 367.452 kb on + strand, within Dshi_0385 at 367.533 kb on + strand, within Dshi_0385 at 367.567 kb on - strand, within Dshi_0385 at 367.678 kb on + strand, within Dshi_0385 at 367.704 kb on - strand, within Dshi_0385 at 367.780 kb on - strand, within Dshi_0385 at 367.853 kb on + strand, within Dshi_0385 at 367.958 kb on - strand, within Dshi_0385 at 368.060 kb on - strand, within Dshi_0385 at 368.206 kb on + strand at 368.214 kb on - strand at 368.214 kb on - strand at 368.280 kb on + strand at 368.316 kb on - strand at 368.561 kb on + strand, within Dshi_0386 at 368.567 kb on - strand, within Dshi_0386 at 368.726 kb on - strand, within Dshi_0386 at 368.728 kb on + strand, within Dshi_0386 at 368.733 kb on + strand, within Dshi_0386 at 368.835 kb on - strand, within Dshi_0386 at 368.847 kb on - strand, within Dshi_0386 at 368.847 kb on - strand, within Dshi_0386 at 368.847 kb on - strand, within Dshi_0386 at 368.857 kb on + strand, within Dshi_0386 at 368.863 kb on + strand, within Dshi_0386 at 368.936 kb on - strand, within Dshi_0386 at 369.053 kb on - strand, within Dshi_0386 at 369.111 kb on + strand at 369.119 kb on - strand at 369.119 kb on - strand at 369.142 kb on - strand at 369.662 kb on - strand at 369.692 kb on + strand at 369.700 kb on - strand at 369.700 kb on - strand at 369.700 kb on - strand at 369.700 kb on - strand at 370.034 kb on - strand, within Dshi_0388 at 370.110 kb on + strand, within Dshi_0388
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 367,295 - Dshi_0385 0.27 +0.5 367,386 - Dshi_0385 0.34 +0.7 367,386 - Dshi_0385 0.34 -0.3 367,452 + Dshi_0385 0.39 -0.1 367,533 + Dshi_0385 0.46 +0.1 367,567 - Dshi_0385 0.48 -0.9 367,678 + Dshi_0385 0.57 +0.1 367,704 - Dshi_0385 0.59 +0.3 367,780 - Dshi_0385 0.65 +0.6 367,853 + Dshi_0385 0.71 +0.0 367,958 - Dshi_0385 0.80 -0.3 368,060 - Dshi_0385 0.88 -0.7 368,206 + -0.5 368,214 - +0.4 368,214 - -0.4 368,280 + -0.4 368,316 - +0.6 368,561 + Dshi_0386 0.31 -0.7 368,567 - Dshi_0386 0.32 -0.7 368,726 - Dshi_0386 0.50 -0.5 368,728 + Dshi_0386 0.51 -0.3 368,733 + Dshi_0386 0.51 -1.6 368,835 - Dshi_0386 0.63 -0.9 368,847 - Dshi_0386 0.64 -0.4 368,847 - Dshi_0386 0.64 +0.1 368,847 - Dshi_0386 0.64 -0.1 368,857 + Dshi_0386 0.66 +0.7 368,863 + Dshi_0386 0.66 -1.3 368,936 - Dshi_0386 0.75 -0.4 369,053 - Dshi_0386 0.88 -1.4 369,111 + +0.4 369,119 - -0.2 369,119 - +1.4 369,142 - +0.1 369,662 - -0.3 369,692 + -0.7 369,700 - +0.3 369,700 - +1.6 369,700 - +0.2 369,700 - +0.0 370,034 - Dshi_0388 0.34 +0.7 370,110 + Dshi_0388 0.44 -0.8
Or see this region's nucleotide sequence