Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0200

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0198 and Dshi_0199 are separated by 55 nucleotidesDshi_0199 and Dshi_0200 overlap by 4 nucleotidesDshi_0200 and Dshi_0201 overlap by 8 nucleotidesDshi_0201 and Dshi_0202 are separated by 3 nucleotides Dshi_0198: Dshi_0198 - holo-acyl-carrier-protein synthase (RefSeq), at 197,844 to 198,263 _0198 Dshi_0199: Dshi_0199 - signal peptidase I (RefSeq), at 198,319 to 199,104 _0199 Dshi_0200: Dshi_0200 - Ribonuclease III (RefSeq), at 199,101 to 199,790 _0200 Dshi_0201: Dshi_0201 - GTP-binding protein Era (RefSeq), at 199,783 to 200,709 _0201 Dshi_0202: Dshi_0202 - protein of unknown function DUF1491 (RefSeq), at 200,713 to 201,045 _0202 Position (kb) 199 200Strain fitness (log2 ratio) -1 0 1at 200.654 kb on + strandat 200.786 kb on + strand, within Dshi_0202at 200.786 kb on + strand, within Dshi_0202

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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200,654 + -0.6
200,786 + Dshi_0202 0.22 -0.1
200,786 + Dshi_0202 0.22 -0.3

Or see this region's nucleotide sequence