Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4679 and SO4680 are separated by 19 nucleotides SO4680 and SO4681 are separated by 35 nucleotides
SO4679: SO4679 - glycosyl transferase, group 1 family protein (NCBI ptt file), at 4,877,644 to 4,878,729
SO4679
SO4680: SO4680 - conserved hypothetical protein (NCBI ptt file), at 4,878,749 to 4,879,825
SO4680
SO4681: SO4681 - glycosyl transferase, group 1 family protein (NCBI ptt file), at 4,879,861 to 4,881,039
SO4681
Position (kb) 4878
4879
4880 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9 at 4877.795 kb on - strand, within SO4679 at 4878.131 kb on - strand, within SO4679 at 4878.216 kb on - strand, within SO4679 at 4878.299 kb on + strand, within SO4679 at 4878.307 kb on - strand, within SO4679 at 4878.331 kb on + strand, within SO4679 at 4878.334 kb on - strand, within SO4679 at 4878.334 kb on - strand, within SO4679 at 4878.349 kb on - strand, within SO4679 at 4878.520 kb on + strand, within SO4679 at 4878.520 kb on + strand, within SO4679 at 4878.525 kb on + strand, within SO4679 at 4878.526 kb on - strand, within SO4679 at 4878.594 kb on - strand, within SO4679 at 4878.689 kb on - strand at 4878.794 kb on + strand at 4878.794 kb on + strand at 4878.794 kb on + strand at 4878.802 kb on - strand at 4878.802 kb on - strand at 4878.802 kb on - strand at 4879.019 kb on - strand, within SO4680 at 4879.029 kb on + strand, within SO4680 at 4879.097 kb on - strand, within SO4680 at 4879.107 kb on - strand, within SO4680 at 4879.129 kb on + strand, within SO4680 at 4879.262 kb on - strand, within SO4680 at 4879.286 kb on + strand, within SO4680 at 4879.286 kb on + strand, within SO4680 at 4879.294 kb on - strand, within SO4680 at 4879.294 kb on - strand, within SO4680 at 4879.294 kb on - strand, within SO4680 at 4879.294 kb on - strand, within SO4680 at 4879.294 kb on - strand, within SO4680 at 4879.318 kb on + strand, within SO4680 at 4879.326 kb on - strand, within SO4680 at 4879.353 kb on + strand, within SO4680 at 4879.353 kb on + strand, within SO4680 at 4879.361 kb on - strand, within SO4680 at 4879.361 kb on - strand, within SO4680 at 4879.399 kb on + strand, within SO4680 at 4879.407 kb on - strand, within SO4680 at 4879.431 kb on - strand, within SO4680 at 4879.473 kb on + strand, within SO4680 at 4879.488 kb on - strand, within SO4680 at 4879.491 kb on - strand, within SO4680 at 4879.522 kb on + strand, within SO4680 at 4879.522 kb on + strand, within SO4680 at 4879.522 kb on + strand, within SO4680 at 4879.522 kb on + strand, within SO4680 at 4879.522 kb on + strand, within SO4680 at 4879.530 kb on - strand, within SO4680 at 4879.575 kb on + strand, within SO4680 at 4879.619 kb on - strand, within SO4680 at 4879.750 kb on + strand at 4879.750 kb on + strand at 4879.750 kb on + strand at 4879.758 kb on - strand at 4879.758 kb on - strand at 4879.758 kb on - strand at 4879.758 kb on - strand at 4879.758 kb on - strand at 4879.846 kb on + strand at 4879.879 kb on - strand at 4879.898 kb on - strand at 4879.931 kb on + strand at 4880.026 kb on + strand, within SO4681 at 4880.026 kb on + strand, within SO4681 at 4880.046 kb on - strand, within SO4681 at 4880.050 kb on + strand, within SO4681 at 4880.050 kb on + strand, within SO4681 at 4880.050 kb on + strand, within SO4681 at 4880.058 kb on - strand, within SO4681 at 4880.058 kb on - strand, within SO4681 at 4880.065 kb on + strand, within SO4681 at 4880.108 kb on - strand, within SO4681 at 4880.111 kb on + strand, within SO4681 at 4880.111 kb on + strand, within SO4681 at 4880.118 kb on - strand, within SO4681 at 4880.131 kb on + strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.139 kb on - strand, within SO4681 at 4880.169 kb on + strand, within SO4681 at 4880.233 kb on - strand, within SO4681 at 4880.253 kb on - strand, within SO4681 at 4880.253 kb on - strand, within SO4681 at 4880.301 kb on + strand, within SO4681 at 4880.301 kb on + strand, within SO4681 at 4880.309 kb on - strand, within SO4681 at 4880.309 kb on - strand, within SO4681 at 4880.375 kb on + strand, within SO4681 at 4880.388 kb on + strand, within SO4681 at 4880.396 kb on - strand, within SO4681 at 4880.508 kb on - strand, within SO4681 at 4880.567 kb on + strand, within SO4681 at 4880.567 kb on + strand, within SO4681 at 4880.567 kb on + strand, within SO4681 at 4880.567 kb on + strand, within SO4681 at 4880.574 kb on + strand, within SO4681 at 4880.575 kb on + strand, within SO4681 at 4880.575 kb on + strand, within SO4681 at 4880.575 kb on + strand, within SO4681 at 4880.575 kb on + strand, within SO4681 at 4880.575 kb on - strand, within SO4681 at 4880.575 kb on - strand, within SO4681 at 4880.575 kb on - strand, within SO4681 at 4880.583 kb on - strand, within SO4681 at 4880.583 kb on - strand, within SO4681 at 4880.583 kb on - strand, within SO4681 at 4880.583 kb on - strand, within SO4681 at 4880.597 kb on + strand, within SO4681 at 4880.636 kb on + strand, within SO4681 at 4880.644 kb on - strand, within SO4681 at 4880.644 kb on - strand, within SO4681 at 4880.644 kb on - strand, within SO4681 at 4880.653 kb on + strand, within SO4681 at 4880.661 kb on - strand, within SO4681 at 4880.661 kb on - strand, within SO4681 at 4880.824 kb on + strand, within SO4681 at 4880.824 kb on + strand, within SO4681
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 4,877,795 - SO4679 0.14 +7.2 4,878,131 - SO4679 0.45 +7.2 4,878,216 - SO4679 0.53 +6.3 4,878,299 + SO4679 0.60 +3.5 4,878,307 - SO4679 0.61 +6.5 4,878,331 + SO4679 0.63 +4.4 4,878,334 - SO4679 0.64 +7.0 4,878,334 - SO4679 0.64 +6.9 4,878,349 - SO4679 0.65 +7.1 4,878,520 + SO4679 0.81 +3.5 4,878,520 + SO4679 0.81 +3.7 4,878,525 + SO4679 0.81 +4.0 4,878,526 - SO4679 0.81 +7.1 4,878,594 - SO4679 0.87 +8.6 4,878,689 - +6.5 4,878,794 + +8.6 4,878,794 + +7.9 4,878,794 + +6.9 4,878,802 - +9.2 4,878,802 - +6.5 4,878,802 - +7.4 4,879,019 - SO4680 0.25 +8.0 4,879,029 + SO4680 0.26 +8.2 4,879,097 - SO4680 0.32 +6.1 4,879,107 - SO4680 0.33 +7.2 4,879,129 + SO4680 0.35 +8.4 4,879,262 - SO4680 0.48 +7.4 4,879,286 + SO4680 0.50 +7.8 4,879,286 + SO4680 0.50 +8.3 4,879,294 - SO4680 0.51 +8.1 4,879,294 - SO4680 0.51 +8.1 4,879,294 - SO4680 0.51 +8.3 4,879,294 - SO4680 0.51 +7.7 4,879,294 - SO4680 0.51 +6.8 4,879,318 + SO4680 0.53 +8.1 4,879,326 - SO4680 0.54 +8.2 4,879,353 + SO4680 0.56 +9.3 4,879,353 + SO4680 0.56 +6.7 4,879,361 - SO4680 0.57 +7.8 4,879,361 - SO4680 0.57 +8.8 4,879,399 + SO4680 0.60 +7.6 4,879,407 - SO4680 0.61 +8.3 4,879,431 - SO4680 0.63 +7.4 4,879,473 + SO4680 0.67 +8.4 4,879,488 - SO4680 0.69 +8.2 4,879,491 - SO4680 0.69 +7.8 4,879,522 + SO4680 0.72 +7.8 4,879,522 + SO4680 0.72 +7.9 4,879,522 + SO4680 0.72 +8.0 4,879,522 + SO4680 0.72 +8.3 4,879,522 + SO4680 0.72 +8.5 4,879,530 - SO4680 0.73 +8.1 4,879,575 + SO4680 0.77 +8.2 4,879,619 - SO4680 0.81 +7.8 4,879,750 + +8.2 4,879,750 + +7.5 4,879,750 + +7.1 4,879,758 - +8.7 4,879,758 - +8.0 4,879,758 - +7.4 4,879,758 - +9.0 4,879,758 - +7.5 4,879,846 + -1.3 4,879,879 - -0.2 4,879,898 - +0.4 4,879,931 + -0.7 4,880,026 + SO4681 0.14 +2.1 4,880,026 + SO4681 0.14 +1.1 4,880,046 - SO4681 0.16 +0.7 4,880,050 + SO4681 0.16 +1.4 4,880,050 + SO4681 0.16 +1.0 4,880,050 + SO4681 0.16 +1.6 4,880,058 - SO4681 0.17 -1.0 4,880,058 - SO4681 0.17 +0.8 4,880,065 + SO4681 0.17 +0.8 4,880,108 - SO4681 0.21 +1.0 4,880,111 + SO4681 0.21 +0.7 4,880,111 + SO4681 0.21 +1.0 4,880,118 - SO4681 0.22 +1.0 4,880,131 + SO4681 0.23 +1.6 4,880,139 - SO4681 0.24 -0.8 4,880,139 - SO4681 0.24 +0.1 4,880,139 - SO4681 0.24 +0.8 4,880,139 - SO4681 0.24 +0.5 4,880,139 - SO4681 0.24 +1.8 4,880,139 - SO4681 0.24 +0.7 4,880,169 + SO4681 0.26 +1.2 4,880,233 - SO4681 0.32 +2.2 4,880,253 - SO4681 0.33 +0.4 4,880,253 - SO4681 0.33 +1.5 4,880,301 + SO4681 0.37 -1.0 4,880,301 + SO4681 0.37 +0.3 4,880,309 - SO4681 0.38 +1.9 4,880,309 - SO4681 0.38 -0.1 4,880,375 + SO4681 0.44 +0.9 4,880,388 + SO4681 0.45 +0.9 4,880,396 - SO4681 0.45 -0.7 4,880,508 - SO4681 0.55 +1.3 4,880,567 + SO4681 0.60 +2.5 4,880,567 + SO4681 0.60 +0.7 4,880,567 + SO4681 0.60 +1.1 4,880,567 + SO4681 0.60 +0.5 4,880,574 + SO4681 0.60 +0.1 4,880,575 + SO4681 0.61 +0.9 4,880,575 + SO4681 0.61 +0.7 4,880,575 + SO4681 0.61 +0.8 4,880,575 + SO4681 0.61 +0.4 4,880,575 - SO4681 0.61 -0.3 4,880,575 - SO4681 0.61 +0.9 4,880,575 - SO4681 0.61 +0.3 4,880,583 - SO4681 0.61 +0.5 4,880,583 - SO4681 0.61 +2.3 4,880,583 - SO4681 0.61 +0.9 4,880,583 - SO4681 0.61 +0.7 4,880,597 + SO4681 0.62 +1.0 4,880,636 + SO4681 0.66 +1.5 4,880,644 - SO4681 0.66 +0.2 4,880,644 - SO4681 0.66 +0.8 4,880,644 - SO4681 0.66 +0.7 4,880,653 + SO4681 0.67 +0.4 4,880,661 - SO4681 0.68 -1.0 4,880,661 - SO4681 0.68 +0.5 4,880,824 + SO4681 0.82 +0.8 4,880,824 + SO4681 0.82 +1.5
Or see this region's nucleotide sequence