Strain Fitness in Shewanella oneidensis MR-1 around SO4047

Experiment: Gly-Glu (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gly-Glu (C)
4,199,770	+		SO4046	0.46	+0.5
4,199,789	+		SO4046	0.50	-0.5
4,199,794	+		SO4046	0.51	+1.1
4,199,794	+		SO4046	0.51	+0.6
4,199,794	+		SO4046	0.51	-0.7
4,199,794	+		SO4046	0.51	-0.5
4,199,794	+		SO4046	0.51	+0.7
4,199,794	+		SO4046	0.51	-0.9
4,199,794	+		SO4046	0.51	+0.3
4,199,794	+		SO4046	0.51	-0.1
4,199,802	+		SO4046	0.52	-1.5
4,199,802	+		SO4046	0.52	+0.5
4,199,802	-		SO4046	0.52	+0.9
4,199,802	-		SO4046	0.52	-0.7
4,199,802	-		SO4046	0.52	+0.9
4,199,802	-		SO4046	0.52	-0.1
4,199,802	-		SO4046	0.52	+1.5
4,199,802	-		SO4046	0.52	+0.3
4,199,802	-		SO4046	0.52	+0.9
4,199,802	-		SO4046	0.52	+0.3
4,199,802	-		SO4046	0.52	+1.4
4,199,802	-		SO4046	0.52	+1.6
4,199,802	-		SO4046	0.52	+0.2
4,199,802	-		SO4046	0.52	-0.5
4,199,802	-		SO4046	0.52	-1.1
4,199,802	-		SO4046	0.52	+0.1
4,199,807	+		SO4046	0.53	+0.3
4,199,815	-		SO4046	0.55	-0.6
4,199,827	+		SO4046	0.57	-0.0
4,199,830	+		SO4046	0.58	+0.8
4,199,831	-		SO4046	0.58	-0.9
4,199,832	+		SO4046	0.58	+0.7
4,199,838	-		SO4046	0.59	+0.2
4,199,843	-		SO4046	0.60	+1.2
4,199,874	+		SO4046	0.66	-0.2
4,199,874	+		SO4046	0.66	-0.7
4,199,882	-		SO4046	0.68	-0.6
4,199,882	-		SO4046	0.68	+1.7
4,199,887	+		SO4046	0.69	+0.1
4,199,887	+		SO4046	0.69	-0.3
4,199,895	-		SO4046	0.71	-0.0
4,199,895	-		SO4046	0.71	+0.2
4,199,900	-		SO4046	0.72	+0.2
4,199,907	-		SO4046	0.73	-0.5
4,199,911	+		SO4046	0.74	+0.3
4,199,934	+		SO4046	0.78	+0.2
4,199,934	+		SO4046	0.78	+0.5
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	+0.2
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	-0.7
4,199,934	+		SO4046	0.78	+0.7
4,199,934	+		SO4046	0.78	-0.9
4,199,934	+		SO4046	0.78	+0.1
4,199,934	+		SO4046	0.78	-0.4
4,199,934	+		SO4046	0.78	+0.3
4,199,934	+		SO4046	0.78	+0.2
4,199,934	+		SO4046	0.78	+1.0
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	-0.3
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	-0.9
4,199,934	+		SO4046	0.78	-0.2
4,199,934	+		SO4046	0.78	-0.6
4,199,934	+		SO4046	0.78	+0.5
4,199,934	+		SO4046	0.78	-0.1
4,199,934	+		SO4046	0.78	+0.1
4,199,934	+		SO4046	0.78	-0.4
4,199,934	+		SO4046	0.78	+0.3
4,199,934	+		SO4046	0.78	-0.3
4,199,934	+		SO4046	0.78	+0.4
4,199,934	+		SO4046	0.78	+0.5
4,199,934	+		SO4046	0.78	+0.7
4,199,934	+		SO4046	0.78	+1.0
4,199,934	+		SO4046	0.78	+1.7
4,199,934	+		SO4046	0.78	+1.2
4,199,934	+		SO4046	0.78	-0.4
4,199,934	+		SO4046	0.78	+0.2
4,199,934	+		SO4046	0.78	-1.4
4,199,934	+		SO4046	0.78	-0.2
4,199,934	+		SO4046	0.78	-1.8
4,199,942	-		SO4046	0.80	-0.0
4,199,942	-		SO4046	0.80	+1.0
4,199,942	-		SO4046	0.80	-0.4
4,199,942	-		SO4046	0.80	+0.4
4,199,942	-		SO4046	0.80	+0.8
4,199,942	-		SO4046	0.80	-1.2
4,199,942	-		SO4046	0.80	+1.1
4,199,942	-		SO4046	0.80	+0.4
4,199,942	-		SO4046	0.80	-0.5
4,199,942	-		SO4046	0.80	-0.6
4,199,942	-		SO4046	0.80	-0.5
4,199,942	-		SO4046	0.80	-0.1
4,199,942	-		SO4046	0.80	-1.2
4,199,942	-		SO4046	0.80	-0.5
4,199,942	-		SO4046	0.80	+0.8
4,199,942	-		SO4046	0.80	+0.9
4,199,942	-		SO4046	0.80	-1.9
4,199,942	-		SO4046	0.80	-0.2
4,199,942	-		SO4046	0.80	-0.3
4,199,942	-		SO4046	0.80	+0.8
4,199,942	-		SO4046	0.80	-0.7
4,199,942	-		SO4046	0.80	+0.4
4,199,942	-		SO4046	0.80	-0.6
4,199,942	-		SO4046	0.80	-0.7
4,199,942	-		SO4046	0.80	-0.0
4,199,942	-		SO4046	0.80	-0.9
4,199,942	-		SO4046	0.80	-0.3
4,199,942	-		SO4046	0.80	-0.7
4,199,946	+		SO4046	0.81	+0.1
4,199,946	+		SO4046	0.81	+0.3
4,199,946	+		SO4046	0.81	-0.6
4,199,946	+		SO4046	0.81	+1.1
4,199,946	+		SO4046	0.81	+0.2
4,199,954	+		SO4046	0.82	+0.4
4,199,954	-		SO4046	0.82	-0.3
4,199,954	-		SO4046	0.82	-1.1
4,199,954	-		SO4046	0.82	-0.8
4,199,954	-		SO4046	0.82	-0.2
4,199,954	-		SO4046	0.82	+0.5
4,199,974	-		SO4046	0.86	+0.4
4,199,974	-		SO4046	0.86	+1.7
4,200,030	+				-0.3
4,200,055	-				-0.1
4,200,059	+				+0.8
4,200,067	-				+3.0
4,200,072	+				-0.5
4,200,080	+				+0.2
4,200,080	-				+0.1
4,200,082	+				+0.8
4,200,088	-				+0.1
4,200,090	-				+0.5
4,200,131	+				-0.5
4,200,134	-				-0.4
4,200,135	+				-0.7
4,200,143	+				+0.7
4,200,143	-				+1.3
4,200,151	-				+0.7
4,200,162	+				-0.9
4,200,188	-				-0.1
4,200,212	-				+3.8
4,200,269	+				+1.3
4,200,274	+				+0.2
4,200,336	-				-1.1
4,200,566	-				-1.4
4,200,582	+				-0.7
4,200,621	-				+0.2
4,200,737	-				-1.0
4,200,750	+				-0.2
4,200,753	+				-0.1
4,200,753	+				-1.3
4,200,753	+				+0.3
4,200,756	-				+0.1
4,200,761	-				-0.3
4,200,761	-				-0.1
4,200,813	-				-0.2
4,200,833	+				+0.3
4,200,833	+				-1.5
4,200,930	-		SO4047	0.15	-2.3
4,200,946	-		SO4047	0.17	+0.0
4,200,946	-		SO4047	0.17	+1.2
4,201,010	+		SO4047	0.23	-1.0
4,201,010	+		SO4047	0.23	-0.1
4,201,010	+		SO4047	0.23	+0.4
4,201,018	-		SO4047	0.24	-1.3
4,201,018	-		SO4047	0.24	-0.8
4,201,019	-		SO4047	0.24	-1.8
4,201,037	-		SO4047	0.25	-1.1
4,201,096	+		SO4047	0.31	-2.0
4,201,104	-		SO4047	0.32	+0.2
4,201,104	-		SO4047	0.32	-1.0
4,201,155	+		SO4047	0.37	-0.1
4,201,193	+		SO4047	0.40	+0.0
4,201,202	+		SO4047	0.41	-1.9
4,201,222	+		SO4047	0.43	+0.1
4,201,232	+		SO4047	0.44	-1.0
4,201,232	+		SO4047	0.44	-0.7
4,201,232	-		SO4047	0.44	-1.2
4,201,238	+		SO4047	0.44	+0.1
4,201,283	+		SO4047	0.49	-1.1
4,201,303	+		SO4047	0.51	+0.8
4,201,311	-		SO4047	0.51	-0.4
4,201,369	+		SO4047	0.57	-0.5
4,201,392	+		SO4047	0.59	+0.3
4,201,400	-		SO4047	0.60	-0.5
4,201,400	-		SO4047	0.60	-1.9
4,201,400	-		SO4047	0.60	+1.4
4,201,442	-		SO4047	0.64	-3.5
4,201,517	+		SO4047	0.71	-1.3
4,201,525	-		SO4047	0.72	-1.3
4,201,540	-		SO4047	0.73	+0.1
4,201,594	-		SO4047	0.78	-0.2
4,201,661	-		SO4047	0.84	-1.6
4,201,753	+				-1.1
4,201,753	+				+0.2
4,201,761	-				-1.9
4,201,761	-				-1.0
4,201,768	+				-1.1
4,201,771	-				+0.3
4,202,012	+		SO4048	0.28	-0.4
4,202,130	+		SO4048	0.47	+0.4
4,202,133	-		SO4048	0.48	-0.5
4,202,326	+		SO4048	0.78	-0.4
4,202,399	+				-2.7
4,202,399	+				-0.3
4,202,399	+				-1.0
4,202,407	-				-0.2
4,202,412	-				+0.4
4,202,575	-				-0.2
4,202,642	+				+0.8