Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0813 and SO0815 are separated by 473 nucleotides SO0815 and SO0816 are separated by 260 nucleotides
SO0813: SO0813 - hypothetical protein (NCBI ptt file), at 825,239 to 826,681
SO0813
SO0815: SO0815 - TonB-dependent receptor C-terminal domain protein (NCBI ptt file), at 827,155 to 829,116
SO0815
SO0816: SO0816 - hypothetical protein (NCBI ptt file), at 829,377 to 830,105
SO0816
Position (kb) 827
828
829
830 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 826.188 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.253 kb on + strand, within SO0813 at 826.416 kb on + strand, within SO0813 at 826.473 kb on - strand, within SO0813 at 826.606 kb on - strand at 826.650 kb on - strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.764 kb on - strand at 826.764 kb on - strand at 826.769 kb on - strand at 826.769 kb on - strand at 826.774 kb on - strand at 826.827 kb on + strand at 826.827 kb on + strand at 826.970 kb on + strand at 826.971 kb on - strand at 826.987 kb on + strand at 827.258 kb on - strand at 827.259 kb on - strand at 827.299 kb on + strand at 827.318 kb on + strand at 827.452 kb on - strand, within SO0815 at 827.459 kb on - strand, within SO0815 at 827.474 kb on + strand, within SO0815 at 827.600 kb on - strand, within SO0815 at 827.693 kb on - strand, within SO0815 at 827.714 kb on + strand, within SO0815 at 827.767 kb on - strand, within SO0815 at 827.767 kb on - strand, within SO0815 at 827.812 kb on + strand, within SO0815 at 827.815 kb on - strand, within SO0815 at 827.845 kb on + strand, within SO0815 at 827.995 kb on - strand, within SO0815 at 827.997 kb on + strand, within SO0815 at 828.007 kb on + strand, within SO0815 at 828.049 kb on + strand, within SO0815 at 828.121 kb on + strand, within SO0815 at 828.123 kb on - strand, within SO0815 at 828.169 kb on + strand, within SO0815 at 828.169 kb on + strand, within SO0815 at 828.185 kb on - strand, within SO0815 at 828.231 kb on - strand, within SO0815 at 828.282 kb on - strand, within SO0815 at 828.310 kb on - strand, within SO0815 at 828.317 kb on - strand, within SO0815 at 828.391 kb on - strand, within SO0815 at 828.403 kb on - strand, within SO0815 at 828.419 kb on + strand, within SO0815 at 828.419 kb on + strand, within SO0815 at 828.419 kb on + strand, within SO0815 at 828.479 kb on - strand, within SO0815 at 828.504 kb on + strand, within SO0815 at 828.522 kb on - strand, within SO0815 at 828.554 kb on + strand, within SO0815 at 828.571 kb on + strand, within SO0815 at 828.650 kb on + strand, within SO0815 at 828.657 kb on + strand, within SO0815 at 828.657 kb on + strand, within SO0815 at 828.657 kb on + strand, within SO0815 at 828.836 kb on - strand, within SO0815 at 828.841 kb on - strand, within SO0815 at 828.935 kb on + strand at 829.047 kb on + strand at 829.118 kb on - strand at 829.157 kb on - strand at 829.157 kb on - strand at 829.164 kb on - strand at 829.170 kb on + strand at 829.218 kb on - strand at 829.229 kb on + strand at 829.250 kb on - strand at 829.326 kb on - strand at 829.341 kb on - strand at 829.362 kb on + strand at 829.370 kb on - strand at 829.409 kb on + strand at 829.562 kb on + strand, within SO0816 at 829.562 kb on + strand, within SO0816 at 829.577 kb on + strand, within SO0816 at 829.585 kb on - strand, within SO0816 at 829.585 kb on - strand, within SO0816 at 829.594 kb on + strand, within SO0816 at 829.617 kb on - strand, within SO0816 at 829.648 kb on - strand, within SO0816 at 829.680 kb on - strand, within SO0816 at 829.680 kb on - strand, within SO0816 at 829.772 kb on - strand, within SO0816 at 829.812 kb on + strand, within SO0816 at 829.812 kb on + strand, within SO0816 at 829.812 kb on + strand, within SO0816 at 829.812 kb on + strand, within SO0816 at 829.819 kb on + strand, within SO0816 at 829.820 kb on - strand, within SO0816 at 829.834 kb on + strand, within SO0816 at 830.011 kb on + strand, within SO0816 at 830.044 kb on + strand at 830.050 kb on + strand at 830.055 kb on + strand at 830.055 kb on + strand at 830.063 kb on - strand at 830.063 kb on - strand at 830.063 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 826,188 + SO0813 0.66 -0.7 826,216 + SO0813 0.68 -0.6 826,216 + SO0813 0.68 -0.9 826,216 + SO0813 0.68 +0.8 826,216 + SO0813 0.68 +0.8 826,216 + SO0813 0.68 +0.3 826,224 - SO0813 0.68 -0.2 826,224 - SO0813 0.68 -0.4 826,224 - SO0813 0.68 -2.1 826,224 - SO0813 0.68 -0.8 826,224 - SO0813 0.68 -0.1 826,253 + SO0813 0.70 -0.2 826,416 + SO0813 0.82 -1.7 826,473 - SO0813 0.86 -2.3 826,606 - -0.3 826,650 - -0.6 826,756 + -1.6 826,756 + -2.7 826,756 + -0.9 826,756 + -3.4 826,764 - -3.3 826,764 - -1.9 826,769 - -3.2 826,769 - -2.5 826,774 - -2.0 826,827 + -3.3 826,827 + -1.7 826,970 + -1.7 826,971 - -1.7 826,987 + -0.8 827,258 - -3.6 827,259 - -1.9 827,299 + -4.0 827,318 + -2.8 827,452 - SO0815 0.15 -4.6 827,459 - SO0815 0.15 -1.2 827,474 + SO0815 0.16 -3.4 827,600 - SO0815 0.23 -3.7 827,693 - SO0815 0.27 -3.4 827,714 + SO0815 0.28 -2.8 827,767 - SO0815 0.31 -3.3 827,767 - SO0815 0.31 -3.9 827,812 + SO0815 0.33 -3.2 827,815 - SO0815 0.34 +1.1 827,845 + SO0815 0.35 -3.5 827,995 - SO0815 0.43 -2.9 827,997 + SO0815 0.43 -2.6 828,007 + SO0815 0.43 -4.1 828,049 + SO0815 0.46 -1.3 828,121 + SO0815 0.49 -3.9 828,123 - SO0815 0.49 -2.8 828,169 + SO0815 0.52 -3.5 828,169 + SO0815 0.52 -1.7 828,185 - SO0815 0.52 -1.6 828,231 - SO0815 0.55 -0.8 828,282 - SO0815 0.57 -2.7 828,310 - SO0815 0.59 -2.2 828,317 - SO0815 0.59 -4.7 828,391 - SO0815 0.63 -2.6 828,403 - SO0815 0.64 -0.3 828,419 + SO0815 0.64 -2.5 828,419 + SO0815 0.64 -3.9 828,419 + SO0815 0.64 -2.8 828,479 - SO0815 0.67 -3.3 828,504 + SO0815 0.69 -2.2 828,522 - SO0815 0.70 -2.7 828,554 + SO0815 0.71 -3.0 828,571 + SO0815 0.72 -2.2 828,650 + SO0815 0.76 -4.0 828,657 + SO0815 0.77 -0.3 828,657 + SO0815 0.77 -2.9 828,657 + SO0815 0.77 -3.5 828,836 - SO0815 0.86 -0.8 828,841 - SO0815 0.86 -0.3 828,935 + -2.5 829,047 + -2.5 829,118 - -0.9 829,157 - -4.5 829,157 - -3.9 829,164 - -3.0 829,170 + -0.1 829,218 - +1.5 829,229 + +0.3 829,250 - -0.5 829,326 - -1.0 829,341 - +0.2 829,362 + -0.2 829,370 - -1.8 829,409 + -1.3 829,562 + SO0816 0.25 +0.3 829,562 + SO0816 0.25 -0.2 829,577 + SO0816 0.27 +0.7 829,585 - SO0816 0.29 +0.8 829,585 - SO0816 0.29 +0.7 829,594 + SO0816 0.30 +0.1 829,617 - SO0816 0.33 -3.3 829,648 - SO0816 0.37 -0.1 829,680 - SO0816 0.42 -0.4 829,680 - SO0816 0.42 +0.8 829,772 - SO0816 0.54 +0.4 829,812 + SO0816 0.60 +0.2 829,812 + SO0816 0.60 +0.4 829,812 + SO0816 0.60 -0.0 829,812 + SO0816 0.60 -0.7 829,819 + SO0816 0.61 +2.1 829,820 - SO0816 0.61 -0.7 829,834 + SO0816 0.63 +0.3 830,011 + SO0816 0.87 -0.5 830,044 + -0.2 830,050 + +0.1 830,055 + -1.7 830,055 + -0.7 830,063 - +0.7 830,063 - -0.3 830,063 - +1.1
Or see this region's nucleotide sequence