Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0812 and SO0813 are separated by 3 nucleotides SO0813 and SO0815 are separated by 473 nucleotides
SO0812: SO0812 - hypothetical protein (NCBI ptt file), at 823,889 to 825,235
SO0812
SO0813: SO0813 - hypothetical protein (NCBI ptt file), at 825,239 to 826,681
SO0813
SO0815: SO0815 - TonB-dependent receptor C-terminal domain protein (NCBI ptt file), at 827,155 to 829,116
SO0815
Position (kb) 825
826
827 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 824.239 kb on + strand, within SO0812 at 824.247 kb on - strand, within SO0812 at 824.249 kb on - strand, within SO0812 at 824.269 kb on - strand, within SO0812 at 824.271 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.334 kb on - strand, within SO0812 at 824.588 kb on - strand, within SO0812 at 824.719 kb on + strand, within SO0812 at 824.741 kb on + strand, within SO0812 at 824.787 kb on + strand, within SO0812 at 824.787 kb on + strand, within SO0812 at 824.795 kb on - strand, within SO0812 at 824.795 kb on - strand, within SO0812 at 824.828 kb on - strand, within SO0812 at 824.828 kb on - strand, within SO0812 at 824.856 kb on - strand, within SO0812 at 824.911 kb on + strand, within SO0812 at 824.919 kb on - strand, within SO0812 at 825.003 kb on + strand, within SO0812 at 825.046 kb on + strand, within SO0812 at 825.054 kb on - strand, within SO0812 at 825.158 kb on - strand at 825.183 kb on + strand at 825.203 kb on - strand at 825.244 kb on + strand at 825.465 kb on + strand, within SO0813 at 825.470 kb on + strand, within SO0813 at 825.499 kb on + strand, within SO0813 at 825.507 kb on - strand, within SO0813 at 825.556 kb on + strand, within SO0813 at 825.564 kb on - strand, within SO0813 at 825.594 kb on + strand, within SO0813 at 825.594 kb on + strand, within SO0813 at 825.631 kb on - strand, within SO0813 at 825.631 kb on - strand, within SO0813 at 825.666 kb on - strand, within SO0813 at 825.666 kb on - strand, within SO0813 at 825.753 kb on - strand, within SO0813 at 825.783 kb on + strand, within SO0813 at 825.783 kb on + strand, within SO0813 at 825.791 kb on - strand, within SO0813 at 825.791 kb on - strand, within SO0813 at 825.815 kb on + strand, within SO0813 at 825.815 kb on + strand, within SO0813 at 825.925 kb on + strand, within SO0813 at 825.961 kb on + strand, within SO0813 at 825.961 kb on + strand, within SO0813 at 825.995 kb on - strand, within SO0813 at 825.995 kb on - strand, within SO0813 at 826.054 kb on + strand, within SO0813 at 826.077 kb on - strand, within SO0813 at 826.101 kb on - strand, within SO0813 at 826.124 kb on + strand, within SO0813 at 826.140 kb on - strand, within SO0813 at 826.188 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.216 kb on + strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.224 kb on - strand, within SO0813 at 826.253 kb on + strand, within SO0813 at 826.416 kb on + strand, within SO0813 at 826.473 kb on - strand, within SO0813 at 826.606 kb on - strand at 826.650 kb on - strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.756 kb on + strand at 826.764 kb on - strand at 826.764 kb on - strand at 826.769 kb on - strand at 826.769 kb on - strand at 826.774 kb on - strand at 826.827 kb on + strand at 826.827 kb on + strand at 826.970 kb on + strand at 826.971 kb on - strand at 826.987 kb on + strand at 827.258 kb on - strand at 827.259 kb on - strand at 827.299 kb on + strand at 827.318 kb on + strand at 827.452 kb on - strand, within SO0815 at 827.459 kb on - strand, within SO0815 at 827.474 kb on + strand, within SO0815 at 827.600 kb on - strand, within SO0815
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 824,239 + SO0812 0.26 +0.1 824,247 - SO0812 0.27 +0.3 824,249 - SO0812 0.27 -0.3 824,269 - SO0812 0.28 -1.0 824,271 - SO0812 0.28 +0.0 824,334 - SO0812 0.33 +0.0 824,334 - SO0812 0.33 -0.8 824,588 - SO0812 0.52 -0.5 824,719 + SO0812 0.62 -2.8 824,741 + SO0812 0.63 +0.9 824,787 + SO0812 0.67 +1.0 824,787 + SO0812 0.67 -0.3 824,795 - SO0812 0.67 +0.1 824,795 - SO0812 0.67 +0.1 824,828 - SO0812 0.70 -0.3 824,828 - SO0812 0.70 +0.8 824,856 - SO0812 0.72 -0.3 824,911 + SO0812 0.76 +0.2 824,919 - SO0812 0.76 -0.9 825,003 + SO0812 0.83 -1.2 825,046 + SO0812 0.86 -0.8 825,054 - SO0812 0.86 +2.3 825,158 - -0.4 825,183 + -0.2 825,203 - -1.5 825,244 + -2.1 825,465 + SO0813 0.16 +2.2 825,470 + SO0813 0.16 -2.3 825,499 + SO0813 0.18 +0.1 825,507 - SO0813 0.19 +0.5 825,556 + SO0813 0.22 -1.2 825,564 - SO0813 0.23 -1.3 825,594 + SO0813 0.25 -0.2 825,594 + SO0813 0.25 +0.8 825,631 - SO0813 0.27 -1.3 825,631 - SO0813 0.27 -0.7 825,666 - SO0813 0.30 -0.2 825,666 - SO0813 0.30 -0.6 825,753 - SO0813 0.36 +0.6 825,783 + SO0813 0.38 +0.7 825,783 + SO0813 0.38 +0.7 825,791 - SO0813 0.38 -0.3 825,791 - SO0813 0.38 +0.1 825,815 + SO0813 0.40 -0.8 825,815 + SO0813 0.40 -0.4 825,925 + SO0813 0.48 +0.4 825,961 + SO0813 0.50 +0.3 825,961 + SO0813 0.50 +0.1 825,995 - SO0813 0.52 -0.5 825,995 - SO0813 0.52 +0.4 826,054 + SO0813 0.56 -0.2 826,077 - SO0813 0.58 -0.8 826,101 - SO0813 0.60 +0.2 826,124 + SO0813 0.61 -0.7 826,140 - SO0813 0.62 -1.2 826,188 + SO0813 0.66 -0.7 826,216 + SO0813 0.68 -0.6 826,216 + SO0813 0.68 -0.9 826,216 + SO0813 0.68 +0.8 826,216 + SO0813 0.68 +0.8 826,216 + SO0813 0.68 +0.3 826,224 - SO0813 0.68 -0.2 826,224 - SO0813 0.68 -0.4 826,224 - SO0813 0.68 -2.1 826,224 - SO0813 0.68 -0.8 826,224 - SO0813 0.68 -0.1 826,253 + SO0813 0.70 -0.2 826,416 + SO0813 0.82 -1.7 826,473 - SO0813 0.86 -2.3 826,606 - -0.3 826,650 - -0.6 826,756 + -1.6 826,756 + -2.7 826,756 + -0.9 826,756 + -3.4 826,764 - -3.3 826,764 - -1.9 826,769 - -3.2 826,769 - -2.5 826,774 - -2.0 826,827 + -3.3 826,827 + -1.7 826,970 + -1.7 826,971 - -1.7 826,987 + -0.8 827,258 - -3.6 827,259 - -1.9 827,299 + -4.0 827,318 + -2.8 827,452 - SO0815 0.15 -4.6 827,459 - SO0815 0.15 -1.2 827,474 + SO0815 0.16 -3.4 827,600 - SO0815 0.23 -3.7
Or see this region's nucleotide sequence